Browse Element(s) Details


OsAffx.26982.1.S1_x_at

Description tigr:9630.m02231
TID=OsAffx.26982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2403011/11hypothetical protein
LOC_Os05g234903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23980OsAffx.20440.2.S1_x_at2/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23980OsAffx.20440.1.S1_x_at1/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23990NANA2+13903955..13906103retrotransposon, putative, centromere-specific
LOC_Os02g24000NANA2+13906936..13908560retrotransposon, putative, centromere-specific
LOC_Os02g24010OsAffx.24400.1.S1_at11/112+13909993..13910738hypothetical protein
LOC_Os02g24020Os.4716.1.S1_at11/112+13911428..13917195dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os02g24030OsAffx.26982.1.S1_x_at11/112+13921777..13922528hypothetical protein
LOC_Os02g24030OsAffx.26982.2.S1_at2/112+13921777..13922528hypothetical protein
LOC_Os02g24040NANA2+13925683..13925937hypothetical protein
LOC_Os02g24050NANA2+13931004..13932354hypothetical protein
LOC_Os02g24060NANA2+13933244..13934839hypothetical protein
LOC_Os02g24070OsAffx.30837.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24070OsAffx.8548.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24080Os.21394.1.S1_at11/112+13943561..13946014SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26982.1.S1_x_at--4--5131Chr02:13921807..13921831 (25 bp)
GCACACAAGAACTATATGATTCACC
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--295--2751Chr02:13921813..13921837 (25 bp)
AAGAACTATATGATTCACCATTATC
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--756--3373Chr05:13364635..13364662 (25 bp)
CACCATTATCATCTTGTCCAAGATT
LOC_Os05g23490
OsAffx.26982.1.S1_x_at--459--9593Chr05:13364649..13364673 (25 bp)
TCTTGTCCAAGATTCATGCTTCATG
LOC_Os05g23490
OsAffx.26982.1.S1_x_at--1003--10531Chr02:13921851..13921875 (25 bp)
TTCATGCTTCATGCAGGACACGGAG
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--533--9651Chr02:13921892..13922053 (25 bp)
TCAGAGGAGTGTGCAACGCAGTGCT
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--5--991Chr02:13922036..13922057 (22 bp)
AGGAGTGTGCAACGCAGTGCTGTTT
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--926--1073Chr05:13365037..13365060 (24 bp)
AGGGAAGTTGGCAGCACATACGCAT
LOC_Os05g23490
OsAffx.26982.1.S1_x_at--347--6431Chr02:13922300..13922457 (25 bp)
GATCAGACCAATAAGATGAAAACAG
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--589--6311Chr02:13922447..13922471 (25 bp)
GATGAAAACAGTTACTTGTGGTATC
LOC_Os02g24030
OsAffx.26982.1.S1_x_at--147--3451Chr02:13922455..13922479 (25 bp)
CAGTTACTTGTGGTATCTGTAGGCA
LOC_Os02g24030
Target Sequence 
GCACACAAGAACTATATGATTCACCATTATCATCTTGTCCAAGATTCATGCTTCATGCAGGACACGGAGGGAGTGGAGGA
AGAGGTCAGAGGAGTGTGCAACGCAGTGCTGTTTGTGTATGCACATAACAAGAATGAAATTAAGGGGAGCAGCTCTGGTG
CGACAGGGAAGTTGGCAGCACATACGCATTTCATTGAGCACATCTTGAGCGTTCTAGATTTCTTGAATGTTTTATATTGT
GATCAGACCAATAAGATGAAAACAGTTACTTGTGGTATCTGTAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26982.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis