Browse Element(s) Details


OsAffx.29724.4.S1_at

Description tigr:9630.m02238
TID=OsAffx.29724.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g240909/11hypothetical protein
LOC_Os09g049801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24030OsAffx.26982.1.S1_x_at11/112+13921777..13922528hypothetical protein
LOC_Os02g24030OsAffx.26982.2.S1_at2/112+13921777..13922528hypothetical protein
LOC_Os02g24040NANA2+13925683..13925937hypothetical protein
LOC_Os02g24050NANA2+13931004..13932354hypothetical protein
LOC_Os02g24060NANA2+13933244..13934839hypothetical protein
LOC_Os02g24070OsAffx.30837.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24070OsAffx.8548.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24080Os.21394.1.S1_at11/112+13943561..13946014SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein
LOC_Os02g24100NANA2+13960068..13960676hypothetical protein
LOC_Os02g24109NANA2+13964471..13964954NA
LOC_Os02g24120OsAffx.12165.1.S1_at10/112+13966737..13968675hypothetical protein
LOC_Os02g24120Os.31653.1.S1_at1/112+13966737..13968675hypothetical protein
LOC_Os02g24134Os.6798.2.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_a_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S2_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134OsAffx.28592.1.S1_at1/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29724.4.S1_at--434--8011Chr02:13947772..13947796 (25 bp)
GGAGGACGTACTTCACACTCAAGAT
LOC_Os02g24090
OsAffx.29724.4.S1_at--38--5771Chr02:13947768..13947792 (25 bp)
GACGTACTTCACACTCAAGATTCAA
LOC_Os02g24090
OsAffx.29724.4.S1_at--175--5412Chr09:2680560..2680585 (25 bp)
GAAGCGTCAGCTGTTGAGACACTTG
LOC_Os09g04980
OsAffx.29724.4.S1_at--1033--171NONE
ATTTATTGCCATTTGGAGGCAAGAT
NONE
OsAffx.29724.4.S1_at--1072--6191Chr02:13947155..13947589 (25 bp)
GAGGCAAGATTTCCAGTGCAGGCCA
LOC_Os02g24090
OsAffx.29724.4.S1_at--935--5171Chr02:13947152..13947173 (22 bp)
GCAAGATTTCCAGTGCAGGCCAAGG
LOC_Os02g24090
OsAffx.29724.4.S1_at--1028--2231Chr02:13947091..13947115 (25 bp)
ACAATAGCTATCCTCTGGATTACCT
LOC_Os02g24090
OsAffx.29724.4.S1_at--1059--9991Chr02:13947087..13947111 (25 bp)
TAGCTATCCTCTGGATTACCTTAAC
LOC_Os02g24090
OsAffx.29724.4.S1_at--531--8631Chr02:13946973..13946997 (25 bp)
TGGGTTGTGCAACGGAACTAGACTT
LOC_Os02g24090
OsAffx.29724.4.S1_at--369--8691NONE
TGTGCAACGGAACTAGACTTATGCT
NONE
OsAffx.29724.4.S1_at--777--5691Chr02:13946710..13946977 (25 bp)
GACTTATGCTATATGATGCATTGTC
LOC_Os02g24090
Target Sequence 
GGAGGACGTACTTCACACTCAAGATTCAAAATCCCTATTAAGATTGCTCACAACAGCATGTGCAACTTCACGAAGCAAAG
TGGCACCGCGGAATTGCTTCACATGGCGTCCTTAATTATTTGGGATGAAGCTGCAATGACGAAGCGTCAGCTGTTGAGAC
ACTTGATAGGTATCTTCAAGACATTATGGGTTATTTATTGCCATTTGGAGGCAAGATTTCCAGTGCAGGCCAAGGTTTAT
CATAGCTTTGACTCTGTTGATGATGACCCTCACAATAGCTATCCTCTGGATTACCTTAACTCTATCACTCCAAATGGTCT
CCCACCACACGAGCTGATAGTAAAAATCAATTGTCCTGTGATTCTTCTTCGCAACCTCGATCCTAATAATGGGTTGTGCA
ACGGAACTAGACTTATGCTATATGATGCATTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29724.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis