Browse Element(s) Details


Os.6798.2.S1_at

Description gb:AK064288.1
DB_XREF= gi:32974306
TID=Os.6798.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H02, full insert sequence.
FL= gb:AK064288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2413411/11Vacuolar protein-sorting protein 45 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein
LOC_Os02g24100NANA2+13960068..13960676hypothetical protein
LOC_Os02g24109NANA2+13964471..13964954NA
LOC_Os02g24120OsAffx.12165.1.S1_at10/112+13966737..13968675hypothetical protein
LOC_Os02g24120Os.31653.1.S1_at1/112+13966737..13968675hypothetical protein
LOC_Os02g24134Os.6798.2.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_a_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S2_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134OsAffx.28592.1.S1_at1/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24150NANA2+13987867..13989456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24160NANA2+13992822..13993028NA
LOC_Os02g24170NANA2+13994428..13999534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24190Os.17669.1.S1_a_at11/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.38764.1.S1_x_at6/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.48015.1.A1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.31813.1.S1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.20877.1.S1_at1/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006886biological_processintracellular protein transport
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008565molecular_functionprotein transporter activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.6798.2.S1_at--1026--9171Chr02:13977859..13977883 (25 bp)
TGCCTTTCTTGTTTCCTACGAAAGA
LOC_Os02g24134
Os.6798.2.S1_at--970--3451Chr02:13977801..13977825 (25 bp)
CAGTGCAGATTTGCCTTTGCTGTCA
LOC_Os02g24134
Os.6798.2.S1_at--779--4731Chr02:13977783..13977807 (25 bp)
GCTGTCACTGACATGTAGTCCCAGG
LOC_Os02g24134
Os.6798.2.S1_at--870--6931Chr02:13977769..13977793 (25 bp)
GTAGTCCCAGGACTCATGTGAGTCA
LOC_Os02g24134
Os.6798.2.S1_at--249--5711Chr02:13977759..13977783 (25 bp)
GACTCATGTGAGTCACACATACAAT
LOC_Os02g24134
Os.6798.2.S1_at--291--6891Chr02:13977709..13977733 (25 bp)
GTAATGTTTAAGCTAGCCACCCTTC
LOC_Os02g24134
Os.6798.2.S1_at--359--3711Chr02:13977697..13977721 (25 bp)
CTAGCCACCCTTCTTTATATTGTTA
LOC_Os02g24134
Os.6798.2.S1_at--131--51Chr02:13977679..13977703 (25 bp)
ATTGTTACATTTGGCAACCTCATGC
LOC_Os02g24134
Os.6798.2.S1_at--1154--3231Chr02:13977665..13977689 (25 bp)
CAACCTCATGCTTCCAATTTTTACT
LOC_Os02g24134
Os.6798.2.S1_at--227--4911Chr02:13977656..13977680 (25 bp)
GCTTCCAATTTTTACTTTTCACTAG
LOC_Os02g24134
Os.6798.2.S1_at--1011--2031Chr02:13977643..13977667 (25 bp)
ACTTTTCACTAGCATTCGTAATACA
LOC_Os02g24134
Target Sequence
TGCCTTTCTTGTTTCCTACGAAAGAAAGGAAAAAACAATTATGTCACTGGAAAGTAGGCAGTGCAGATTTGCCTTTGCTG
TCACTGACATGTAGTCCCAGGACTCATGTGAGTCACACATACAATGGAGAATAAGTGAATCCCCCTGAAAGTAATGTTTA
AGCTAGCCACCCTTCTTTATATTGTTACATTTGGCAACCTCATGCTTCCAATTTTTACTTTTCACTAGCATTCGTAATAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6798.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis