Browse Element(s) Details


Os.6798.1.S2_at

Description gb:AK066001.1
DB_XREF= gi:32976019
TID=Os.6798.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049L06, full insert sequence.
FL= gb:AK066001.1 gb:AK067724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2413411/11Vacuolar protein-sorting protein 45 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein
LOC_Os02g24100NANA2+13960068..13960676hypothetical protein
LOC_Os02g24109NANA2+13964471..13964954NA
LOC_Os02g24120OsAffx.12165.1.S1_at10/112+13966737..13968675hypothetical protein
LOC_Os02g24120Os.31653.1.S1_at1/112+13966737..13968675hypothetical protein
LOC_Os02g24134Os.6798.2.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_a_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S2_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134OsAffx.28592.1.S1_at1/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24150NANA2+13987867..13989456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24160NANA2+13992822..13993028NA
LOC_Os02g24170NANA2+13994428..13999534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24190Os.17669.1.S1_a_at11/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.38764.1.S1_x_at6/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.48015.1.A1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.31813.1.S1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.20877.1.S1_at1/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006886biological_processintracellular protein transport
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6798.1.S2_at--956--1671Chr02:13972681..13972705 (25 bp)
AGCCTCTTCTCTTTCAGACCATGGA
LOC_Os02g24134
Os.6798.1.S2_at--1061--1291Chr02:13972632..13972656 (25 bp)
AGATGCTGATTATCCGCTTGTTGGC
LOC_Os02g24134
Os.6798.1.S2_at--474--891Chr02:13972377..13972401 (25 bp)
AGGCCTCAAGATGTTGTGCTGTTCA
LOC_Os02g24134
Os.6798.1.S2_at--621--6191Chr02:13972332..13972356 (25 bp)
GAGGAAGCAAGATCAGTAGCCCTTT
LOC_Os02g24134
Os.6798.1.S2_at--543--6971Chr02:13972317..13972341 (25 bp)
GTAGCCCTTTACAATGCAGCAAATC
LOC_Os02g24134
Os.6798.1.S2_at--622--5131Chr02:13972299..13972323 (25 bp)
GCAAATCCTGGAGTTCGGTTCTTTC
LOC_Os02g24134
Os.6798.1.S2_at--868--691Chr02:13972064..13972088 (25 bp)
ATGAGCAGGCTCTTAGCTTCTACAG
LOC_Os02g24134
Os.6798.1.S2_at--668--9531Chr02:13972046..13972070 (25 bp)
TCTACAGCTTGAAACTTGGCAGTCT
LOC_Os02g24134
Os.6798.1.S2_at--815--10411Chr02:13971874..13971898 (25 bp)
TTATTGCTGCATATAGGGCGCTCCG
LOC_Os02g24134
Os.6798.1.S2_at--320--7551Chr02:13971859..13971883 (25 bp)
GGGCGCTCCGGGTGAAATTAATATT
LOC_Os02g24134
Os.6798.1.S2_at--161--5251Chr02:13971806..13971830 (25 bp)
GAATCAACATTCAAGTCGCGCATTT
LOC_Os02g24134
Target Sequence 
AGCCTCTTCTCTTTCAGACCATGGANGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCAN
TNTTNCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGC
CCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATG
ACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGG
CAGTCTGACAATTGAAACTTGTGGTGTTTTTGCNTAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGAT
TCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGC
TGCATATAGGGCGCTCCGGGTGAAATTAATATTTAANNNANNNNANNNNAANGTCCTGGGAGAATCAACATTCAAGTCGC
GCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6798.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis