Browse Element(s) Details


Os.31653.1.S1_at

Description gb:AK106968.1
DB_XREF= gi:32992177
TID=Os.31653.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.22 (P0684B02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G01, full insert sequence.
FL= gb:AK106968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g241201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24080Os.21394.1.S1_at11/112+13943561..13946014SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein
LOC_Os02g24100NANA2+13960068..13960676hypothetical protein
LOC_Os02g24109NANA2+13964471..13964954NA
LOC_Os02g24120OsAffx.12165.1.S1_at10/112+13966737..13968675hypothetical protein
LOC_Os02g24120Os.31653.1.S1_at1/112+13966737..13968675hypothetical protein
LOC_Os02g24134Os.6798.2.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_a_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S1_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134Os.6798.1.S2_at11/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24134OsAffx.28592.1.S1_at1/112+13971781..13981560Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os02g24150NANA2+13987867..13989456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24160NANA2+13992822..13993028NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31653.1.S1_at--463--8471Chr01:29604576..29604600 (25 bp)
TGGCGTCCTGCCCTTGGAAACCGAC
NONE
Os.31653.1.S1_at--939--3591Chr01:29604564..29604588 (25 bp)
CTTGGAAACCGACGCTTTAGCTGTG
NONE
Os.31653.1.S1_at--807--2371Chr01:29604559..29604583 (25 bp)
AAACCGACGCTTTAGCTGTGGCGCC
NONE
Os.31653.1.S1_at--873--10591Chr01:29604425..29604449 (25 bp)
TTCTCCGGCACAATGGCGGCACCTT
NONE
Os.31653.1.S1_at--587--5111Chr01:29604418..29604442 (25 bp)
GCACAATGGCGGCACCTTCTTCATG
NONE
Os.31653.1.S1_at--789--8272Chr03:27684063..27684087 (25 bp)
GGCATCCTCGGCTCCAATGAGTAGT
NONE
Os.31653.1.S1_at--757--9452Chr03:27684056..27684080 (25 bp)
TCGGCTCCAATGAGTAGTGGTGCCA
NONE
Os.31653.1.S1_at--391--1092Chr03:27684041..27684065 (25 bp)
AGTGGTGCCAGTGATTTAGTTTTTT
NONE
Os.31653.1.S1_at--600--10831Chr01:29604269..29604293 (25 bp)
TTGTGATTTAATTTTCTTGCATGAT
NONE
Os.31653.1.S1_at--611--9731Chr01:29604261..29604285 (25 bp)
TAATTTTCTTGCATGATTTTGATTC
NONE
Os.31653.1.S1_at--166--6557Chr09:4426254..4426302 (25 bp)
GATTTTGATTCATTGTTGTTGGATT
NONE
Target Sequence 
TGGCGTCCTGCCCTTGGAAACCGACGCTTTAGCTGTGGCGCCCTCCCAAGGCGGGCGGCGCCTCAGCCGCGGTGCCTCGT
ACCACCCTCCTCCTGGCCGGCGATGCCCTTTCCCCAGCGGGCGGCGTTCTCTCCTCGGCGGCATCACCTTCTTCTCCGGC
ACAATGGCGGCACCTTCTTCATGGGAGCCCCTCGGCGGCGGCACCCTCCTCATGGCGCACGGCGGCAGCACACGCGCCAT
CCACCACGACCTCGGGGGCAGCGGCATCCTCGGCTCCAATGAGTAGTGGTGCCAGTGATTTAGTTTTTTGTGATTTAATT
TTCTTGCATGATTTTGATTCATTGTTGTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis