Browse Element(s) Details


Os.21394.1.S1_at

Description gb:AK065640.1
DB_XREF= gi:32975658
TID=Os.21394.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038P06, full insert sequence.
FL= gb:AK065640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2408011/11SNAP25 homologous protein SNAP30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24030OsAffx.26982.1.S1_x_at11/112+13921777..13922528hypothetical protein
LOC_Os02g24030OsAffx.26982.2.S1_at2/112+13921777..13922528hypothetical protein
LOC_Os02g24040NANA2+13925683..13925937hypothetical protein
LOC_Os02g24050NANA2+13931004..13932354hypothetical protein
LOC_Os02g24060NANA2+13933244..13934839hypothetical protein
LOC_Os02g24070OsAffx.30837.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24070OsAffx.8548.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24080Os.21394.1.S1_at11/112+13943561..13946014SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g24090OsAffx.29724.4.S1_at9/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.6.S1_x_at5/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.1.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.3.S1_x_at3/112+13946598..13953675hypothetical protein
LOC_Os02g24090OsAffx.29724.2.S1_x_at2/112+13946598..13953675hypothetical protein
LOC_Os02g24100NANA2+13960068..13960676hypothetical protein
LOC_Os02g24109NANA2+13964471..13964954NA
LOC_Os02g24120OsAffx.12165.1.S1_at10/112+13966737..13968675hypothetical protein
LOC_Os02g24120Os.31653.1.S1_at1/112+13966737..13968675hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006944biological_processmembrane fusion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0016192biological_processvesicle-mediated transport
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005886cellular_componentplasma membrane
GO:0009504cellular_componentcell plate
GO:0005484molecular_functionSNAP receptor activity
GO:0005486molecular_functiont-SNARE activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21394.1.S1_at--732--4691Chr02:13944064..13944088 (25 bp)
GCGGCAAATTACTTCCTAATATCTA
LOC_Os02g24080
Os.21394.1.S1_at--1099--6071Chr02:13944002..13944026 (25 bp)
GAGTATTGTTGCTTTAACAGTCCAA
LOC_Os02g24080
Os.21394.1.S1_at--135--8131Chr02:13943896..13943920 (25 bp)
GGACTACGACGAACTGAACTTCAGG
LOC_Os02g24080
Os.21394.1.S1_at--214--2891Chr02:13943868..13943892 (25 bp)
AAGGGAGCAAACACTCGGGCACGCC
LOC_Os02g24080
Os.21394.1.S1_at--393--8251Chr02:13943851..13943875 (25 bp)
GGCACGCCGTCTGCTTGGAAAATAA
LOC_Os02g24080
Os.21394.1.S1_at--224--10471Chr02:13943779..13943803 (25 bp)
TTACCCTTAGTCTTGTGGAGGATAA
LOC_Os02g24080
Os.21394.1.S1_at--153--4331Chr02:13943738..13943762 (25 bp)
CCATTGGTTCTGATGATTCTGTGCA
LOC_Os02g24080
Os.21394.1.S1_at--287--411Chr02:13943703..13943727 (25 bp)
ATCAGTACGGTGAATGGTTGGTCCT
LOC_Os02g24080
Os.21394.1.S1_at--82--10471Chr02:13943634..13943658 (25 bp)
TTAGCCAGTAATGCTTTGTGCCATT
LOC_Os02g24080
Os.21394.1.S1_at--78--231Chr02:13943601..13943625 (25 bp)
ATTTGGATCGTTCGCAATTGTTTCA
LOC_Os02g24080
Os.21394.1.S1_at--1109--3151Chr02:13943586..13943610 (25 bp)
AATTGTTTCAAATCGCGTTAGCATC
LOC_Os02g24080
Target Sequence 
GCGGCAAATTACTTCCTAATATCTAATCTGGAACACTTTGCATAATTATATTTAAATCTGATGAGTATTGTTGCTTTAAC
AGTCCAACCAATAAAAATCATCATGTGATATGTCTTTTTGTCTGTTGATTGGATTCAGACAAACAAAGGCTTTGGGAGAT
TCAGAGAAGGACTACGACGAACTGAACTTCAGGATCAAGGGAGCAAACACTCGGGCACGCCGTCTGCTTGGAAAATAAAC
TGCAGAATATAATCTCATCACAGGACAGGAGTCCTTCCATCCCTTTTACCCTTAGTCTTGTGGAGGATAATTAATTGTTT
TGTGGGCCATTGGTTCTGATGATTCTGTGCATCAGATTTTGATCAGTACGGTGAATGGTTGGTCCTGGATATGTCAGGGT
ATAATGTATCTGTATATACTGCTATAGCCATTAGCCAGTAATGCTTTGTGCCATTGTTTTGGAATTTGGATCGTTCGCAA
TTGTTTCAAATCGCGTTAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis