Browse Element(s) Details


Os.4716.1.S1_at

Description gb:AK065673.1
DB_XREF= gi:32975691
TID=Os.4716.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035D19, full insert sequence.
FL= gb:AK065673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2402011/11dihydrodipicolinate reductase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23970OsAffx.20408.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23970OsAffx.9772.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23970OsAffx.14826.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23980OsAffx.20440.2.S1_x_at2/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23980OsAffx.20440.1.S1_x_at1/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23990NANA2+13903955..13906103retrotransposon, putative, centromere-specific
LOC_Os02g24000NANA2+13906936..13908560retrotransposon, putative, centromere-specific
LOC_Os02g24010OsAffx.24400.1.S1_at11/112+13909993..13910738hypothetical protein
LOC_Os02g24020Os.4716.1.S1_at11/112+13911428..13917195dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os02g24030OsAffx.26982.1.S1_x_at11/112+13921777..13922528hypothetical protein
LOC_Os02g24030OsAffx.26982.2.S1_at2/112+13921777..13922528hypothetical protein
LOC_Os02g24040NANA2+13925683..13925937hypothetical protein
LOC_Os02g24050NANA2+13931004..13932354hypothetical protein
LOC_Os02g24060NANA2+13933244..13934839hypothetical protein
LOC_Os02g24070OsAffx.30837.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified
LOC_Os02g24070OsAffx.8548.1.S1_at1/112+13937768..13939691transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008839molecular_functiondihydrodipicolinate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4716.1.S1_at--528--2231Chr02:13912906..13912930 (25 bp)
AAATTGGACATTTCTGGCACGGCCA
LOC_Os02g24020
Os.4716.1.S1_at--11--5111Chr02:13912890..13912914 (25 bp)
GCACGGCCAAAGCTGTTATCTCTTG
LOC_Os02g24020
Os.4716.1.S1_at--873--7971Chr02:13912058..13912082 (25 bp)
GGATCCTCAGGAACAGCTTACATTG
LOC_Os02g24020
Os.4716.1.S1_at--666--1551Chr02:13912044..13912068 (25 bp)
AGCTTACATTGGTTGGTGTCCCAGA
LOC_Os02g24020
Os.4716.1.S1_at--554--1431Chr02:13912019..13912043 (25 bp)
AGAACATCTTTCTGGTCACGCATTT
LOC_Os02g24020
Os.4716.1.S1_at--700--4951Chr02:13912000..13912024 (25 bp)
GCATTTCACATGTACCATCTCACTT
LOC_Os02g24020
Os.4716.1.S1_at--130--9671Chr02:13911509..13912005 (25 bp)
TCACTTCACCGGATGAGACAGTTTC
LOC_Os02g24020
Os.4716.1.S1_at--1149--6911Chr02:13911849..13911873 (25 bp)
GTATGTGGCCGTTCAATTTACGCAG
LOC_Os02g24020
Os.4716.1.S1_at--1024--3511Chr02:13911625..13911649 (25 bp)
CATGAGATGATCCTCTGTTGGTGTT
LOC_Os02g24020
Os.4716.1.S1_at--94--7051Chr02:13911575..13911599 (25 bp)
GTAAACTCAGATGCGCACCAAAATT
LOC_Os02g24020
Os.4716.1.S1_at--274--6991Chr02:13911505..13911529 (25 bp)
GTACCGTCGGATAGTAGTTTCCTCA
LOC_Os02g24020
Target Sequence 
AAATTGGACATTTCTGGCACGGCCAAAGCTGTTATCTCTTGCTTTCAGAAGTTGGGTGTGTCATTTAACTTGAACGAGGT
TAAGCAGGTCCGGGATCCTCAGGAACAGCTTACATTGGTTGGTGTCCCAGAAGAACATCTTTCTGGTCACGCATTTCACA
TGTACCATCTCACTTCACCGGATGAGACAGTTTCATTTGAGTTTCAACACAATGTATGTGGCCGTTCAATTTACGCAGAG
GGAACTGTGGATGCTGCCCTGTTTCTCCATAAAAAGATACAATCTGGTGCCAACAAGAAATTATATGATATGATTGATGT
CCTAAGAGAGGGCAACATGAGATGATCCTCTGTTGGTGTTATACGTGGTTATGTAACACCGATCTGTAAACTCAGATGCG
CACCAAAATTAGGCGACTACTAAGATTTACCAATTTTCTATTGTAACAAATTGTAGTACCGTCGGATAGTAGTTTCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis