Browse Element(s) Details


OsAffx.24400.1.S1_at

Description tigr:9630.m02229
TID=OsAffx.24400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2401011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23960NANA2+13884583..13885697hypothetical protein
LOC_Os02g23970OsAffx.20408.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23970OsAffx.9772.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23970OsAffx.14826.1.S1_at1/112+13891036..13895400Transposable element protein, putative, Retrotrans_gag
LOC_Os02g23980OsAffx.20440.2.S1_x_at2/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23980OsAffx.20440.1.S1_x_at1/112+13897342..13900047retrotransposon protein, putative, unclassified
LOC_Os02g23990NANA2+13903955..13906103retrotransposon, putative, centromere-specific
LOC_Os02g24000NANA2+13906936..13908560retrotransposon, putative, centromere-specific
LOC_Os02g24010OsAffx.24400.1.S1_at11/112+13909993..13910738hypothetical protein
LOC_Os02g24020Os.4716.1.S1_at11/112+13911428..13917195dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os02g24030OsAffx.26982.1.S1_x_at11/112+13921777..13922528hypothetical protein
LOC_Os02g24030OsAffx.26982.2.S1_at2/112+13921777..13922528hypothetical protein
LOC_Os02g24040NANA2+13925683..13925937hypothetical protein
LOC_Os02g24050NANA2+13931004..13932354hypothetical protein
LOC_Os02g24060NANA2+13933244..13934839hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24400.1.S1_at--764--111Chr02:13910256..13910280 (25 bp)
ATTCAGCAACCATATGAGCATAATG
LOC_Os02g24010
OsAffx.24400.1.S1_at--266--8911Chr02:13910270..13910294 (25 bp)
TGAGCATAATGATGCCTGCCTCACC
LOC_Os02g24010
OsAffx.24400.1.S1_at--658--2991Chr02:13910277..13910301 (25 bp)
AATGATGCCTGCCTCACCAAGGCTT
LOC_Os02g24010
OsAffx.24400.1.S1_at--902--3371Chr02:13910291..13910315 (25 bp)
CACCAAGGCTTGCTCGAGTTCGCCG
LOC_Os02g24010
OsAffx.24400.1.S1_at--110--6072Chr02:13910306..13910330 (25 bp)
GAGTTCGCCGCGGACTGAGGAGGAG
LOC_Os02g24010
OsAffx.24400.1.S1_at--573--1972Chr02:13910319..13910343 (25 bp)
ACTGAGGAGGAGACCGACGCTGCCA
LOC_Os02g24010
OsAffx.24400.1.S1_at--842--4651Chr02:13910370..13910394 (25 bp)
GCGGGAACGGGAGAGCCAGCTTGCT
LOC_Os02g24010
OsAffx.24400.1.S1_at--840--3911Chr02:13910481..13910505 (25 bp)
CTGGCAGGAGTCATCGGGAGCAAAC
LOC_Os02g24010
OsAffx.24400.1.S1_at--448--8071Chr02:13910497..13910521 (25 bp)
GGAGCAAACAGCTCACCGCGGCGGT
LOC_Os02g24010
OsAffx.24400.1.S1_at--545--5691Chr02:13910612..13910636 (25 bp)
GACTACGCCGAAGCGTGAAGCCGCG
LOC_Os02g24010
OsAffx.24400.1.S1_at--672--4911Chr02:13910684..13910708 (25 bp)
GCTTCGTGGCAGAGCCCCTGAAGAT
LOC_Os02g24010
Target Sequence 
ATTCAGCAACCATATGAGCATAATGATGCCTGCCTCACCAAGGCTTGCTCGAGTTCGCCGCGGACTGAGGAGGAGACCGA
CGCTGCCAGCGAGGTGGGGACGCGCGGATCGGCCGCGGGAACGGGAGAGCCAGCTTGCTGGCGCCGGCGGCAGCGGAGTA
GGCAAGGCGCTGGTGCTAGAGCCCGCCAGATGGAGGAGGAAGAGGAGGCGAGGCGGCGGCCGGAGCTGGCAGGAGTCATC
GGGAGCAAACAGCTCACCGCGGCGGTCGGGCACCACGCCGAGCAGCTTCTCCATGCAGCACCCCGCGATGGCGGCGAAGG
ACCCGCCGCGCGCGCCGCCGCGGCGACGACGCCGCCGACTACGCCGAAGCGTGAAGCCGCGCGGATGACGTGGTTGCGCT
TGCGGCTGCTGCTGCTACACCACCCACAGCTTCGTGGCAGAGCCCCTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis