Browse Element(s) Details


OsAffx.26981.1.S1_at

Description tigr:9633.m02081
TID=OsAffx.26981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23440Os.47824.1.S1_at11/115+13327246..13332725anthocyanin-related membrane protein 1, putative, expressed
LOC_Os05g23450Os.53933.1.S1_at11/115+13332955..13335908expressed protein
LOC_Os05g23460Os.50619.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.47824.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.50619.1.S1_x_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23470Os.18025.1.S1_at11/115+13343520..13345932AN1-like Zinc finger family protein, expressed
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein
LOC_Os05g23490OsAffx.26982.2.S1_at11/115+13363793..13365168hypothetical protein
LOC_Os05g23490OsAffx.26982.1.S1_x_at3/115+13363793..13365168hypothetical protein
LOC_Os05g23500OsAffx.29731.1.S1_at2/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.2.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.3.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.30850.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.1001.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26981.1.S1_at--40--6431Chr05:13352773..13352797 (25 bp)
GATCTAGCGCTGCAACATGTATCTA
LOC_Os05g23480
OsAffx.26981.1.S1_at--225--751Chr05:13352757..13352781 (25 bp)
ATGTATCTAGGACCTGTTATCCCTC
LOC_Os05g23480
OsAffx.26981.1.S1_at--234--8791Chr05:13352743..13352767 (25 bp)
TGTTATCCCTCCCATGGTGATGATG
LOC_Os05g23480
OsAffx.26981.1.S1_at--875--6151Chr05:13352613..13352637 (25 bp)
GAGGTAGCACGGACCGACTAACGAT
LOC_Os05g23480
OsAffx.26981.1.S1_at--1063--1851Chr05:13352561..13352585 (25 bp)
ACGAGTTAGTTGCTCTGCTAGGGAA
LOC_Os05g23480
OsAffx.26981.1.S1_at--401--8671Chr05:13351949..13351973 (25 bp)
TGTGGGTTTTCTCTCCCATATGAGA
LOC_Os05g23480
OsAffx.26981.1.S1_at--1024--7711Chr05:13351922..13351946 (25 bp)
GGTGGCGATGCAAGCAGTTCCGATT
LOC_Os05g23480
OsAffx.26981.1.S1_at--45--3451Chr05:13351908..13351932 (25 bp)
CAGTTCCGATTGAGCAACCATGCAT
LOC_Os05g23480
OsAffx.26981.1.S1_at--1105--8411Chr05:13351852..13351876 (25 bp)
GGCCGATGTGGCAAGCTTGACAACG
LOC_Os05g23480
OsAffx.26981.1.S1_at--495--10211Chr05:13351815..13351839 (25 bp)
TATTTTCGTTCTGGCTGTGTGGCAA
LOC_Os05g23480
OsAffx.26981.1.S1_at--3--5952Chr06:1141572..1141699 (25 bp)
GAGCAACGATAACCCGCAATACCTT
NONE
Target Sequence 
GATCTAGCGCTGCAACATGTATCTAGGACCTGTTATCCCTCCCATGGTGATGATGGTGGTTGGGGTGGTGAGGAGATGGC
CATGGACTCGACCCAGCAGTGGCCGCAGGCGAGCAAGCACTTGGTCAAAGGAGGGTTTTGGTCCAGGCCTCAGGTCGGGA
GAGGTAGCACGGACCGACTAACGATGCGGGCAAGCAAACATGAGGTGATGCTACGAGTTAGTTGCTCTGCTAGGGAAGAA
AGCGAGGGATCCCGTGTGGGTTTTCTCTCCCATATGAGAGAGGTGGCGATGCAAGCAGTTCCGATTGAGCAACCATGCAT
TAATGTGTTGGGGGCGAAAGCGGAGCCGCTTGGCCGATGTGGCAAGCTTGACAACGATAACTCTCAACTATTTTCGTTCT
GGCTGTGTGGCAAGGGTTTTTTAGGTGGAGTGGTGCTGATGGCTTCTGTAGAGCAATTGAGTTGTCGTGGAGGCGGAGCT
ACTGCGCCGGGTGGCAAGCTGAGCAACGATAACCCGCAATACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis