Browse Element(s) Details


OsAffx.1001.1.S1_at

Description gb:NM_190921.1
DB_XREF= gi:34908925
GEN=P0691E06.14
TID=OsAffx.1001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0691E06.14 (P0691E06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g235101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein
LOC_Os05g23490OsAffx.26982.2.S1_at11/115+13363793..13365168hypothetical protein
LOC_Os05g23490OsAffx.26982.1.S1_x_at3/115+13363793..13365168hypothetical protein
LOC_Os05g23500OsAffx.29731.1.S1_at2/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.2.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.3.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.30850.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.1001.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23520OsAffx.26983.1.S1_at11/115+13392902..13393441hypothetical protein
LOC_Os05g23530Os.6997.1.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23530Os.6997.2.S1_at11/115+13397739..13404981expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1001.1.S1_at--331--4951Chr01:34195275..34195296 (22 bp)
GCATAAAACCATAGAAACGCGAATT
NONE
OsAffx.1001.1.S1_at--714--10011Chr01:34194951..34195285 (25 bp)
TAGAAACGCGAATTACAAAGAGAGT
NONE
OsAffx.1001.1.S1_at--1027--2771Chr01:34194934..34194958 (25 bp)
AAGAGAGTAGATGAAACCGACGATA
NONE
OsAffx.1001.1.S1_at--537--672Chr05:9252..9570 (25 bp)
ATGAAACCGACGATACCGGCGAGAT
NONE
OsAffx.1001.1.S1_at--454--6493Chr08:1082268..1082287 (20 bp)
GATACCGGCGAGATCGTAGTCGACA
NONE
OsAffx.1001.1.S1_at--10--4632Chr11:15668602..15668703 (24 bp)
GCGAGATCGTAGTCGACAGATTCGA
NONE
OsAffx.1001.1.S1_at--1056--3294Chr12:18131069..18131089 (21 bp)
CAGATTCGACGAGATCTTCCGGCGA
NONE
OsAffx.1001.1.S1_at--853--5671Chr01:34194867..34194891 (25 bp)
GACTTGGCTCCGATTACTCCGGCTT
NONE
OsAffx.1001.1.S1_at--189--9974Chr02:14483843..14483864 (22 bp)
TACCGTGGATTATCTTGACCCCAAG
NONE
OsAffx.1001.1.S1_at--192--9551Chr01:34194760..34194784 (25 bp)
TCTTGACCCCAAGCAAGGCTTGGAG
NONE
OsAffx.1001.1.S1_at--748--2731Chr01:34194750..34194774 (25 bp)
AAGCAAGGCTTGGAGATATGTAATC
NONE
Target Sequence 
GCATAAAACCATAGAAACGCGAATTACAAAGAGAGTAGATGAAACCGACGATACCGGCGAGATCGTAGTCGACAGATTCG
ACGAGATCTTCCGGCGACTTGGCTCCGATTACTCCGGCTTCGTAAACTGTGGGGTCCCCTTTTATACCGTGGATTATCTT
GACCCCAAGCAAGGCTTGGAGATATGTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis