Browse Element(s) Details


OsAffx.26983.1.S1_at

Description tigr:9633.m02085
TID=OsAffx.26983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2352011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23500OsAffx.29731.1.S1_at2/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.2.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.3.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.30850.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.1001.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23520OsAffx.26983.1.S1_at11/115+13392902..13393441hypothetical protein
LOC_Os05g23530Os.6997.1.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23530Os.6997.2.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23540OsAffx.4404.1.S1_at10/115+13408299..13411513hypothetical protein
LOC_Os05g23540OsAffx.707.1.S1_at2/115+13408299..13411513hypothetical protein
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26983.1.S1_at--657--9351Chr05:13392989..13393013 (25 bp)
TCGAATCCAAGGGAGTCCACGTCAT
LOC_Os05g23520
OsAffx.26983.1.S1_at--928--491Chr05:13393012..13393036 (25 bp)
ATCGGCAGCCGAATCTATGATCCGG
LOC_Os05g23520
OsAffx.26983.1.S1_at--369--1991Chr05:13393276..13393300 (25 bp)
ACTCCCTAACGACATTACCGATTGG
LOC_Os05g23520
OsAffx.26983.1.S1_at--319--1851Chr05:13393284..13393308 (25 bp)
ACGACATTACCGATTGGGAGGGTGA
LOC_Os05g23520
OsAffx.26983.1.S1_at--925--6191Chr05:13393324..13393348 (25 bp)
GAGGCTAACATGTGGCCCTATCCTC
LOC_Os05g23520
OsAffx.26983.1.S1_at--742--791Chr05:13393333..13393357 (25 bp)
ATGTGGCCCTATCCTCGTCTTGGAT
LOC_Os05g23520
OsAffx.26983.1.S1_at--529--3691Chr05:13393341..13393365 (25 bp)
CTATCCTCGTCTTGGATCCAGATCA
LOC_Os05g23520
OsAffx.26983.1.S1_at--207--7971Chr05:13393354..13393378 (25 bp)
GGATCCAGATCAAGTCCATGAGGGA
LOC_Os05g23520
OsAffx.26983.1.S1_at--300--7271Chr05:13393367..13393391 (25 bp)
GTCCATGAGGGATCCATGTGGCATA
LOC_Os05g23520
OsAffx.26983.1.S1_at--627--7971Chr05:13393376..13393400 (25 bp)
GGATCCATGTGGCATATGCCCACGT
LOC_Os05g23520
OsAffx.26983.1.S1_at--1055--4951Chr05:13393387..13393411 (25 bp)
GCATATGCCCACGTTGTCTCATGGA
LOC_Os05g23520
Target Sequence 
TCGAATCCAAGGGAGTCCACGTCATCGGCAGCCGAATCTATGATCCGGAGAACCTACAGGTGGTGGCAACTAGAGCCTAC
AGGCGGGGCTCAACAACACGAGCACCGCTCCATGCACACGAACTCCCAGTCTACCACAAACGCCACACTCCCTAACGACA
TTACCGATTGGGAGGGTGAGGGAGAGATGAGAAAGAGGCTAACATGTGGCCCTATCCTCGTCTTGGATCCAGATCAAGTC
CATGAGGGATCCATGTGGCATATGCCCACGTTGTCTCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis