Browse Element(s) Details


OsAffx.4404.1.S1_at

Description tigr:9633.m02088
TID=OsAffx.4404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2355010/11hypothetical protein
LOC_Os05g2354010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23520OsAffx.26983.1.S1_at11/115+13392902..13393441hypothetical protein
LOC_Os05g23530Os.6997.1.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23530Os.6997.2.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23540OsAffx.4404.1.S1_at10/115+13408299..13411513hypothetical protein
LOC_Os05g23540OsAffx.707.1.S1_at2/115+13408299..13411513hypothetical protein
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4404.1.S1_at--1067--7652Chr05:13420479..13420503 (25 bp)
GGGATAATTCCTTACATGAACCAGT
LOC_Os05g23550
OsAffx.4404.1.S1_at--1021--2892Chr05:13420452..13420476 (25 bp)
AAGGTTTTCGTGGATGTGACATTAC
LOC_Os05g23550
OsAffx.4404.1.S1_at--1062--10832Chr05:13420404..13420428 (25 bp)
TTGGTGCATCACGATCTCTTTGAGC
LOC_Os05g23550
OsAffx.4404.1.S1_at--907--5891NONE
GAGCTCGCTGTTGGCACCCAAGGAA
NONE
OsAffx.4404.1.S1_at--261--6292Chr05:13418517..13418541 (25 bp)
GATGAACCTGGTGACCGCTAGTAAA
LOC_Os05g23550
OsAffx.4404.1.S1_at--125--10052Chr05:13418499..13418523 (25 bp)
TAGTAAATGGTCTGACCCTCTCCAT
LOC_Os05g23550
OsAffx.4404.1.S1_at--55--5352Chr05:13418471..13418495 (25 bp)
GAAGATGACCAGCAAGCCGGTCCTT
LOC_Os05g23550
OsAffx.4404.1.S1_at--850--7792Chr05:13418453..13418477 (25 bp)
GGTCCTTTACCCAACAATGTGGAGA
LOC_Os05g23550
OsAffx.4404.1.S1_at--210--8912Chr05:13418334..13418357 (24 bp)
TGAGACGTACTTCATGCCATGCGTT
LOC_Os05g23550
OsAffx.4404.1.S1_at--757--272Chr05:13417426..13417450 (25 bp)
ATATGTGTGTCGTACTGCTCTTAAA
LOC_Os05g23550
OsAffx.4404.1.S1_at--159--2452Chr05:13417404..13417428 (25 bp)
AAAATGCAGCTTTGATGTGCCTAAG
LOC_Os05g23550
Target Sequence 
GGGATAATTCCTTACATGAACCAGTTGAAGGTTTTCGTGGATGTGACATTACATAGGATGATGTTGATGAAGTTGTTGGT
GCATCACGATCTCTTTGAGCTCGCTGTTGGCACCCAAGGAATACAACAATGTTTGAAGAAGATGAGGAAGATATGCAATC
TGACCAAGAAGAAGATAAGGAGGAAGATCCACCTAATGATGCAAATAGCCATCACCGAACTACACCACCCCATCAAGAAG
GTGATGAACCTGGTGACCGCTAGTAAATGGTCTGACCCTCTCCATCACGAAGATGACCAGCAAGCCGGTCCTTTACCCAA
CAATGTGGAGATCAATGTGGCCGAGGCGAATAAATGGATGAGACGTACTTCATGCCATGCGTTGGCAAGTGGAGGCAAGA
GGCCGAGCGCCGCTGACCACGGTCATCAACAAGGTATTGGATGCTACATGGGCTTAAGAGTTGCCAAGAACAAGGTATAT
ATGTGTGTCGTACTGCTCTTAAAATGCAGCTTTGATGTGCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis