Browse Element(s) Details


Os.6997.2.S1_at

Description gb:AK067846.1
DB_XREF= gi:32977864
TID=Os.6997.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127H21, full insert sequence.
FL= gb:AK067846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2353011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23510OsAffx.30850.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23510OsAffx.1001.1.S1_at1/115+13374159..13378547retrotransposon protein, putative, unclassified
LOC_Os05g23520OsAffx.26983.1.S1_at11/115+13392902..13393441hypothetical protein
LOC_Os05g23530Os.6997.1.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23530Os.6997.2.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23540OsAffx.4404.1.S1_at10/115+13408299..13411513hypothetical protein
LOC_Os05g23540OsAffx.707.1.S1_at2/115+13408299..13411513hypothetical protein
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6997.2.S1_at--353--2471Chr05:13402478..13402499 (22 bp)
AACACAACAATGATGCTCCAAGAGG
LOC_Os05g23530
Os.6997.2.S1_at--1024--5492Chr05:13413132..13413156 (25 bp)
GAAAAGCTGCACAATAGTCTACTGA
NONE
Os.6997.2.S1_at--807--9892Chr05:13413151..13413175 (25 bp)
TACTGATCATACTCTCTAGGTTCCT
NONE
Os.6997.2.S1_at--1159--3692Chr05:13413166..13413190 (25 bp)
CTAGGTTCCTCACCTGGCTGAAGGT
NONE
Os.6997.2.S1_at--1094--5592Chr05:13413708..13413732 (25 bp)
GATAAGGCAACCTCTGTTGAGGCCA
NONE
Os.6997.2.S1_at--1081--5312Chr05:13413733..13413757 (25 bp)
GAAGGGCCATTTTTTGCTACAGAAA
NONE
Os.6997.2.S1_at--323--10412Chr05:13413829..13413853 (25 bp)
TTTTGTCCAGATGGCAAAGCCGGCA
NONE
Os.6997.2.S1_at--1003--4452Chr05:13413847..13413871 (25 bp)
GCCGGCAACTTTTGTAACACCTTTG
NONE
Os.6997.2.S1_at--239--7052Chr05:13413860..13413884 (25 bp)
GTAACACCTTTGCAGTTTCCTAGAT
NONE
Os.6997.2.S1_at--857--7372Chr05:13414013..13414037 (25 bp)
GTGACTGTCGATAATGACTATCCAT
NONE
Os.6997.2.S1_at--21--5712Chr05:13414028..13414052 (25 bp)
GACTATCCATCCATTCAGTTCAGTG
NONE
Target Sequence 
AACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGA
TGAAAAGAAAATAGTTGAAAACTATTTATCCNCAAGGCCTAAACNCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATC
ATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAA
GGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAG
AAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGG
AAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTAC
CGTGGTGTGGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6997.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis