Browse Element(s) Details


Os.47933.1.S1_at

Description gb:AK072458.1
DB_XREF= gi:32982481
TID=Os.47933.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121E21, full insert sequence.
FL= gb:AK072458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3411011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47933.1.S1_at--181--9711Chr09:20128285..20128309 (25 bp)
TCAACGACTGGCTCGGCGAGATCGG
LOC_Os09g34110
Os.47933.1.S1_at--807--1831Chr09:20128023..20128047 (25 bp)
ACGCTGATGTTGACGCGGGCGATTT
LOC_Os09g34110
Os.47933.1.S1_at--679--10251Chr09:20127963..20127987 (25 bp)
TTTGATTGGGCCAGCAAACGGGCTT
LOC_Os09g34110
Os.47933.1.S1_at--31--8291Chr09:20127943..20127967 (25 bp)
GGCTTGGCCACCTAGCTAATTTAGT
LOC_Os09g34110
Os.47933.1.S1_at--114--10831Chr09:20127877..20127901 (25 bp)
TTGTGGGATTACTTCTATTTCTTTT
LOC_Os09g34110
Os.47933.1.S1_at--396--7391Chr09:20127823..20127847 (25 bp)
GTGATGACGAACTGACCTGTATTTA
LOC_Os09g34110
Os.47933.1.S1_at--290--5831Chr09:20127810..20127834 (25 bp)
GACCTGTATTTATTACTGACGTCGA
LOC_Os09g34110
Os.47933.1.S1_at--777--1951Chr09:20127796..20127820 (25 bp)
ACTGACGTCGATTGGGTAACTCTGG
LOC_Os09g34110
Os.47933.1.S1_at--756--7051Chr09:20127781..20127805 (25 bp)
GTAACTCTGGATTGTGAGTTCCACC
LOC_Os09g34110
Os.47933.1.S1_at--942--6051Chr09:20127766..20127790 (25 bp)
GAGTTCCACCACTCGATGGGATGGA
LOC_Os09g34110
Os.47933.1.S1_at--412--831Chr09:20127746..20127770 (25 bp)
ATGGATGTGTTCTCCGAATTTTAGA
LOC_Os09g34110
Target Sequence 
TCAACGACTGGCTCGGCGAGATCGGGAAGCGCGGCGAGGCGACTCCCCCGCCGCCGCCTGAAGCGGACGGAGAAGCTGCC
GCGGCCACCATTGCCGCTGCTCCGGCGAACGGTGGCAGTGCCGTACCCGAGGAGACGATCGAGCGGCTAAGGAAGAAGAT
CTACGAGTACCTCCTCACCAACGTCGACTCGGCCGCCGCAGTTCTCGGCGGCGGGGCTTCCGCGCCGGCGCCGGCGGCGC
CGGCGAACGCGAAGAAGGGGTGACGCTGATGTTGACGCGGGCGATTTGGTGGGCCTAATTGGGCCGGAAATAGCGTGTGG
GATTTGATTGGGCCAGCAAACGGGCTTGGCCACCTAGCTAATTTAGTTTTTTNGGGGCTTNTACCTCTCTCTATTTTCCC
TTTTTCTTTTGTGGGATTACTTCTATTTCTTTTTCTTTTGTTACAGAAGAGGAAAAAGAAAGGTGATGACGAACTGACCT
GTATTTATTACTGACGTCGATTGGGTAACTCTGGATTGTGAGTTCCACCACTCGATGGGATGGATGTGTTCTCCGAATTT
TAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis