Browse Element(s) Details


Os.47998.1.S1_at

Description gb:CR290179
DB_XREF= gi:44676745
DB_XREF=CR290179
CLONE=y784g08p3
TID=Os.47998.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0704D04.6 (P0704D04.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4212010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47998.1.S1_at--153--1291Chr01:24210152..24210176 (25 bp)
AGATCCAGAAGTTCCGGCGTACGGC
LOC_Os01g42120
Os.47998.1.S1_at--950--10571Chr01:24210190..24210214 (25 bp)
TTCTACTGCTTCACTGCCCTAATGA
LOC_Os01g42120
Os.47998.1.S1_at--1--4551Chr01:24210205..24210229 (25 bp)
GCCCTAATGACCTATGCTTACACGA
LOC_Os01g42120
Os.47998.1.S1_at--885--5851Chr01:24210354..24210378 (25 bp)
GACCAATTTTATGCCTCATATCCCG
LOC_Os01g42120
Os.47998.1.S1_at--197--10131Chr01:24210372..24210396 (25 bp)
TATCCCGCTGGTACGGAGCTACTAA
LOC_Os01g42120
Os.47998.1.S1_at--1018--8071Chr01:24210386..24210410 (25 bp)
GGAGCTACTAACTGACACTGCAAAG
LOC_Os01g42120
Os.47998.1.S1_at--919--2391Chr01:24210897..24210921 (25 bp)
AAACTTCCGGTTTGTCTTGTGATGA
LOC_Os01g42120
Os.47998.1.S1_at--921--6391Chr01:24210922..24210946 (25 bp)
GATCTGGTGTAAACTGTAGCCCGTA
LOC_Os01g42120
Os.47998.1.S1_at--255--6971Chr01:24210937..24210961 (25 bp)
GTAGCCCGTAAGTTATGGTAGCGTA
LOC_Os01g42120
Os.47998.1.S1_at--1159--2331Chr01:24211008..24211032 (25 bp)
AAAGAGCTGCCTTGGTACGCTGTGA
LOC_Os01g42120
Os.47998.1.S1_at--1067--8311Chr01:24211041..24211065 (25 bp)
GGCTCACGACAGTGAATCGCAGTGT
NONE
Target Sequence 
AGATCCAGAAGTTCCGGCGTACGGCGTCCTANGCTGGATTCTACTGCTTCACTGCCCTAATGACCTATGCTTACACGAGC
AATACGACAAGGNCTGNCATTTCTAGGGGCGACCAATTTTATGCCTCATATCCCGCTGGTACGGAGCTACTAACTGACAC
TGCAAAGCTTTACAAGGCTGCATTAGGTAATTGTTTCGANATAGATGACTGGGGTCCNAATAGAGTTCTCTATCATGGNN
AAACATTTTGATCGGCAAGGCAAANCCACCATATGCGTATCATGCACAATACATGGCACACCTTCTCTCCCATGGGCAGC
TCGATGGAAGTGGATAACTGCACGATGTGCTTAAACTTCCGGTTTGTCTTGTGATGAGATCTGGTGTAAACTGTAGCCCG
TAAGTTATGGTAGCGTATTGTTGGTTTCATCATGACAATTAAATTTTACTAAGATGTTGTACAAAAGAGCTGCCTTGGTA
CGCTGTGAGTTCAGATGGCTCACGACAGTGAATCGCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis