Browse Element(s) Details


Os.33697.1.S1_at

Description gb:AK099440.1
DB_XREF= gi:32984649
TID=Os.33697.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.31 (P0681B11.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020J10, full insert sequence.
FL= gb:AK099440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4209011/11nodulin MtN3 protein, putative, expressed
LOC_Os01g421101/11nodulin MtN3 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33697.1.S1_at--1062--8611Chr01:24192156..24192180 (25 bp)
TGGTGTTCATGCTGGCGGTGATTCT
LOC_Os01g42090
Os.33697.1.S1_at--282--8831Chr01:24192174..24192198 (25 bp)
TGATTCTGGGCGTGCTTCTGAGCGC
LOC_Os01g42090
Os.33697.1.S1_at--793--2731Chr01:24192209..24192233 (25 bp)
AAGAAGCGTTCCATGATCGTCGGCA
LOC_Os01g42090
Os.33697.1.S1_at--246--10572Chr01:24205116..24205140 (25 bp)
TTCTTCGGCTCCATCATGTACTTCT
LOC_Os01g42110
Os.33697.1.S1_at--461--5871Chr01:24193607..24193631 (25 bp)
GAGCGTAGAGTACATGCCGTTCTTC
LOC_Os01g42090
Os.33697.1.S1_at--908--2551Chr01:24193653..24193677 (25 bp)
AACGGCGTTTGCTGGACGGCCTACG
LOC_Os01g42090
Os.33697.1.S1_at--712--9291Chr01:24193684..24193708 (25 bp)
TCCGCTTCGACATCTATGTGACCAT
LOC_Os01g42090
Os.33697.1.S1_at--720--1091Chr01:24193854..24193878 (25 bp)
AGTGGCGGCAGTGTCGTCTCCGTCA
LOC_Os01g42090
Os.33697.1.S1_at--587--9291Chr01:24193872..24193896 (25 bp)
TCCGTCACCGTCGAGCGATAAATTA
LOC_Os01g42090
Os.33697.1.S1_at--964--10811Chr01:24193929..24193953 (25 bp)
TTGGTGGTAGTTTTTTCGGCTCGAT
LOC_Os01g42090
Os.33697.1.S1_at--152--711Chr01:24194017..24194041 (25 bp)
ATGATACAATATCACCCGCCAGTGG
LOC_Os01g42090
Target Sequence 
TGGTGTTCATGCTGGCGGTGATTCTGGGCGTGCTTCTGAGCGCGCACACGCACAAGAAGCGTTCCATGATCGTCGGCATC
CTCTGCGTCTTCTTCGGCTCCATCATGTACTTCTCCCCGCTCACCATCATGGGGAAAGTGATAAAGACGAAGAGCGTAGA
GTACATGCCGTTCTTCCTGTCGCTGGTGTGCTTCCTCAACGGCGTTTGCTGGACGGCCTACGCGCTCATCCGCTTCGACA
TCTATGTGACCATCCCCAACGGCCTCGGTGCCATCTTCGGTGCCATCCAGCTCATCCTCTACGCCTGCTACTACCGGACC
ACACCCAAGAAGACCAAGGCCGCCAAGGACGTCGAGATGCCCTCCGTCATCTCCGGTCCCGGTGCCGCCGCCACCGCCAG
TGGCGGCAGTGTCGTCTCCGTCACCGTCGAGCGATAAATTAAGTAAAATTAAATTAATTAGCTTGTGTTAATTTTGGTGG
TAGTTTTTTCGGCTCGATATATATGATCTAAGTGAGAGTGTAATATTTACCTATATAGTTGAAGTTTGATGAGACAATAC
AATGATACAATATCACCCGCCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis