Browse Element(s) Details


Os.23694.1.S1_at

Description gb:AK063933.1
DB_XREF= gi:32973951
TID=Os.23694.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.27 (P0681B11.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D05, full insert sequence.
FL= gb:AK063933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4204011/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23694.1.S1_at--577--7131Chr01:24173119..24173143 (25 bp)
GTCATTGAAATCTGAGCTGCCTGCA
LOC_Os01g42040
Os.23694.1.S1_at--236--2671Chr01:24173198..24173222 (25 bp)
AAGCCCAATGAACTTCCGTTGTCAG
LOC_Os01g42040
Os.23694.1.S1_at--177--9671Chr01:24173219..24173243 (25 bp)
TCAGCGCCTGTCCTCAAAAATCAGA
LOC_Os01g42040
Os.23694.1.S1_at--1129--1271Chr01:24173241..24173265 (25 bp)
AGATCTTGGGTACCATTGATCCACA
LOC_Os01g42040
Os.23694.1.S1_at--602--931Chr01:24173276..24173300 (25 bp)
AGGCAAAGCAAGTCTTCCATCCAAC
LOC_Os01g42040
Os.23694.1.S1_at--723--6811Chr01:24173449..24173473 (25 bp)
GTTTCATAGGCTACCGTGTAAAGTC
LOC_Os01g42040
Os.23694.1.S1_at--494--3151Chr01:24173498..24173522 (25 bp)
AATTCTCTTGACTGTTTATGATCAC
LOC_Os01g42040
Os.23694.1.S1_at--87--311Chr01:24173530..24173554 (25 bp)
ATACGTTCTTATCTTTATGTTGCCC
LOC_Os01g42040
Os.23694.1.S1_at--86--9551Chr01:24173557..24173581 (25 bp)
TCTATGATATGGGTGTTCGGACTTC
LOC_Os01g42040
Os.23694.1.S1_at--216--8131Chr01:24173575..24173599 (25 bp)
GGACTTCGGAACATGCTGCGCTAGC
LOC_Os01g42040
Os.23694.1.S1_at--419--291Chr01:24173617..24173641 (25 bp)
ATAGAATTCCATGCCTGCCTGCTAG
LOC_Os01g42040
Target Sequence 
GTCATTGAAATCTGAGCTGCCTGCAGACAAGACCATTGAGAAGGAATATATGCAAACAGATTGTTCTCAAAACAACAGGA
AGCCCAATGAACTTCCGTTGTCAGCGCCTGTCCTCAAAAATCAGATCTTGGGTACCATTGATCCACAGAAAGATGCCAGG
CAAAGCAAGTCTTCCATCCAACAAAACACAACTCCTGTGGAGAGGATTGTTGTTTCAGATAGTGAAGATAGTGCTGATGA
ATGTGAAAGACCTTCAAGATCAAGGCTCTCATTGATGAGGAGACGATTGGCTGGAAAACCAAGAAGCTAACTTGACCCAA
AATNTTNGNCGTTTCATAGGCTACCGTGTAAAGTCATGGAAGATGGCAATGCTTCAGTAAATTCTCTTGACTGTTTATGA
TCACATATGTGATACGTTCTTATCTTTATGTTGCCCNATCTATGATATGGGTGTTCGGACTTCGGAACATGCTGCGCTAG
CATCNAGTAGAATTTTTCATAGAATTCCATGCCTGCCTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis