Browse Element(s) Details


OsAffx.23629.2.S1_at

Description tigr:9629.m04026
TID=OsAffx.23629.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNL zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g420508/11zinc ribbon 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23629.2.S1_at--818--7851Chr01:24169673..24169697 (25 bp)
GGTTTCGTGTCTCCGTAGGATACTG
LOC_Os01g42050
OsAffx.23629.2.S1_at--464--10251Chr01:24169671..24169695 (25 bp)
TTTCGTGTCTCCGTAGGATACTGGC
LOC_Os01g42050
OsAffx.23629.2.S1_at--9--9431Chr01:24169669..24169693 (25 bp)
TCGTGTCTCCGTAGGATACTGGCTG
LOC_Os01g42050
OsAffx.23629.2.S1_at--249--7451Chr01:24169667..24169691 (25 bp)
GTGTCTCCGTAGGATACTGGCTGTC
LOC_Os01g42050
OsAffx.23629.2.S1_at--226--7171Chr01:24169665..24169689 (25 bp)
GTCTCCGTAGGATACTGGCTGTCTC
LOC_Os01g42050
OsAffx.23629.2.S1_at--840--9491Chr01:24169664..24169688 (25 bp)
TCTCCGTAGGATACTGGCTGTCTCT
LOC_Os01g42050
OsAffx.23629.2.S1_at--122--9291Chr01:24169662..24169686 (25 bp)
TCCGTAGGATACTGGCTGTCTCTGC
LOC_Os01g42050
OsAffx.23629.2.S1_at--89--4251Chr01:24169661..24169685 (25 bp)
CCGTAGGATACTGGCTGTCTCTGCG
LOC_Os01g42050
OsAffx.23629.2.S1_at--653--3811NONE
CTGCGCCGGCGGAAAGCACTTTTGA
NONE
OsAffx.23629.2.S1_at--644--4551NONE
GCGCCGGCGGAAAGCACTTTTGATC
NONE
OsAffx.23629.2.S1_at--689--4471NONE
GCCGGCGGAAAGCACTTTTGATCTA
NONE
Target Sequence 
GGTTTCGTGTCTCCGTAGGATACTGGCTGTCTCTGCGTGCTCCGGGGAGGCTGATTCGGACGCGGGGTCTGCGCCGGCGG
AAAGCACTTTTGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23629.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis