Browse Element(s) Details


OsAffx.21382.1.S1_at

Description tigr:9629.m04032
TID=OsAffx.21382.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4210011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21382.1.S1_at--485--1391Chr01:24202914..24202938 (25 bp)
AGACCGCAGCGGCTGGAACTTGCCT
LOC_Os01g42100
OsAffx.21382.1.S1_at--293--4531Chr01:24202616..24202640 (25 bp)
GCCGCCACCAACCTTGACAAGGAGA
LOC_Os01g42100
OsAffx.21382.1.S1_at--667--2631Chr01:24202607..24202631 (25 bp)
AACCTTGACAAGGAGACTGGCGGTG
LOC_Os01g42100
OsAffx.21382.1.S1_at--849--7611Chr01:24202452..24202476 (25 bp)
GGGAACGCCGATGGTCGTCACTGTC
LOC_Os01g42100
OsAffx.21382.1.S1_at--1065--8591Chr01:24202441..24202465 (25 bp)
TGGTCGTCACTGTCGAGCCGGCAGA
LOC_Os01g42100
OsAffx.21382.1.S1_at--130--5791Chr01:24202397..24202421 (25 bp)
GACGAGCCAGTCAGTGAGCCAGTAG
LOC_Os01g42100
OsAffx.21382.1.S1_at--848--9991Chr01:24202354..24202378 (25 bp)
TAGCGGCGGCCAATGAGCCAATGGA
LOC_Os01g42100
OsAffx.21382.1.S1_at--615--5491Chr01:24202327..24202351 (25 bp)
GAACAGTGGCGGCTGACAAGCCCAC
LOC_Os01g42100
OsAffx.21382.1.S1_at--144--511Chr01:24202289..24202313 (25 bp)
ATCGTGGCACCAACGCGGCTCATCA
LOC_Os01g42100
OsAffx.21382.1.S1_at--936--2591Chr01:24202278..24202302 (25 bp)
AACGCGGCTCATCAGCCCGGAGAAG
LOC_Os01g42100
OsAffx.21382.1.S1_at--584--4291Chr01:24202196..24202220 (25 bp)
CCTCGAATCGAAGCATCCAGAAGAT
LOC_Os01g42100
Target Sequence 
AGACCGCAGCGGCTGGAACTTGCCTCGGCGAGGAGAGGGCCGGCAGAGACCAAGGCGAAGAGAGGCCCGGCGACACCAAC
GGTGGCGGCAACGTGCTGGGCGCACAGACCGCAGCGGTCGCCGCCACCAACCTTGACAAGGAGACTGGCGGTGGAGGAGA
GCACAACGACAGCGGCGATGTGCGGGCAGCACAGGAGGTGGCCCACTGCGGAGCTTGGCCGACGACGAAGTCTCGGGTGT
CGACAAGGGGTCTAGCGATGGACGAGGTGGCGAAGACAACGGCGGGAACGCCGATGGTCGTCACTGTCGAGCCGGCAGAG
CAGACGGCCGCGGTGATCGACGAGCCAGTCAGTGAGCCAGTAGTGGCAGCTGACGAGTCGGTAGCGGCGGCCAATGAGCC
AATGGAAGGAACAGTGGCGGCTGACAAGCCCACGGTGAGGGAAGGCATCGTGGCACCAACGCGGCTCATCAGCCCGGAGA
AGGGAGACGGCCCAGAGAGGGAGGGCGGCCCACCGGAGAGGGGGGGCATGGGGAGAGGCCCTCGAATCGAAGCATCCAGA
AGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis