Browse Element(s) Details


Os.48029.1.S1_at

Description gb:NM_197016.1
DB_XREF= gi:37535391
TID=Os.48029.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0055P24.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0055P24.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3382010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33800Os.12171.1.S1_at10/1110+17584440..17588381Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os10g33810Os.3387.1.S1_at11/1110+17594205..17596895Myb-related protein Myb4, putative, expressed
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48029.1.S1_at--562--5971Chr10:17610327..17610351 (25 bp)
GAGACGGCTCACTGGGTTTGCGTTC
LOC_Os10g33820
Os.48029.1.S1_at--326--8111Chr10:17610285..17610309 (25 bp)
GGACGCGATCGTGCAGATGCTCTGC
LOC_Os10g33820
Os.48029.1.S1_at--971--9611Chr10:17610196..17610220 (25 bp)
TCATGCCCTTTTCAGCATCTGTCAA
LOC_Os10g33820
Os.48029.1.S1_at--222--6251Chr10:17610134..17610158 (25 bp)
GATGGGTTCTTCATTGCGTGGGCTC
LOC_Os10g33820
Os.48029.1.S1_at--511--6351Chr10:17610104..17610128 (25 bp)
GATGCGGTCGTCTCGGTGCTTTTCA
LOC_Os10g33820
Os.48029.1.S1_at--970--8731Chr10:17610060..17610084 (25 bp)
TGTTATGGACCGTGATCCACGACCG
LOC_Os10g33820
Os.48029.1.S1_at--95--1811Chr10:17610039..17610063 (25 bp)
ACCGCCTGGTCGCAATGCTGTGAAG
LOC_Os10g33820
Os.48029.1.S1_at--845--6331Chr10:17610010..17610034 (25 bp)
GATGCTACCTTGTGTCATTGATGGC
LOC_Os10g33820
Os.48029.1.S1_at--268--7631Chr10:17609934..17609958 (25 bp)
GGGACAGCTTGCCATGGTTACACTT
LOC_Os10g33820
Os.48029.1.S1_at--110--7751Chr10:17609853..17609877 (25 bp)
GGTGTGGCTGATGTTCTACTTTTCA
LOC_Os10g33820
Os.48029.1.S1_at--611--9191Chr10:17609694..17609718 (25 bp)
TGCCTCATAATGCTCATTCATGCCG
NONE
Target Sequence 
GAGACGGCTCACTGGGTTTGCGTTCCTGCGGTGGGCGACGCGGGACGCGATCGTGCAGATGCTCTGCCTCTGGTTCTTCT
CCGAGGTGCACGACCAGGCGCAGCTGTTCAGGCTCTTTGTCGTCNCCAAGCTCATGCCCTTTTCAGCATCTGTCAACCCG
TGGCTCGCTGCGACCGTTGGAGGNCCAGAGCTTGATGGGTTCTTCATTGCGTGGGCTCTCCTTGATGCGGTCGTCTCGGT
GCTTTTCACCGTGGTGCCATGGGTGNTTGTTATGGACCGTGATCCACGACCGCCTGGTCGCAATGCTGTGAAGGAAGGAT
GCTACCTTGTGTCATTGATGGCAACTGATGCCACTTTGATCAAATGCTGGNAAACAGNGGTATGCGGNAGCATGGGACAG
CTTGCCATGGTTACACTTGGTGGGAANGTNCTTGGNGGATNTCTCCACTCAATCGGAGAGGTGTACTTCATGGTGGTGTG
GCTGATGTTCTACTTTTCAGCAAGGTGTAAGGAGTGGGAAGAGGTATATTTCATGCCTCATAATGCTCATTCATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis