Browse Element(s) Details


Os.3387.1.S1_at

Description gb:AK109011.1
DB_XREF= gi:32994220
TID=Os.3387.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myb factor (OSJNBa0055P24.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H11, full insert sequence.
FL= gb:AK109011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3381011/11Myb-related protein Myb4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33790Os.46464.1.S1_a_at11/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33790Os.51693.1.S1_at1/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33800Os.12171.1.S1_at10/1110+17584440..17588381Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os10g33810Os.3387.1.S1_at11/1110+17594205..17596895Myb-related protein Myb4, putative, expressed
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3387.1.S1_at--839--7351Chr10:17594765..17594789 (25 bp)
GTGACGTGCTCCACGGTGACCGAGT
LOC_Os10g33810
Os.3387.1.S1_at--622--1491Chr10:17594698..17594722 (25 bp)
AGCAAACGCAGCATGCCGCTGTCAA
LOC_Os10g33810
Os.3387.1.S1_at--265--3411Chr10:17594690..17594714 (25 bp)
CAGCATGCCGCTGTCAAGGAGGAGA
LOC_Os10g33810
Os.3387.1.S1_at--855--4511Chr10:17594612..17594636 (25 bp)
GCCGACATGGACGAGAGCTTCTGGT
LOC_Os10g33810
Os.3387.1.S1_at--123--4611Chr10:17594452..17594476 (25 bp)
GCGACATGAGGGATTTGGCCGTCTT
LOC_Os10g33810
Os.3387.1.S1_at--834--10231Chr10:17594439..17594463 (25 bp)
TTTGGCCGTCTTGTAATCTATTTAA
LOC_Os10g33810
Os.3387.1.S1_at--461--9631Chr10:17594409..17594433 (25 bp)
TCATGGCAGAATTAAGCTTGATTAA
LOC_Os10g33810
Os.3387.1.S1_at--240--5211Chr10:17594365..17594389 (25 bp)
GAATTGATAGTATCTCTTCTCTGTT
LOC_Os10g33810
Os.3387.1.S1_at--9--7411Chr10:17594271..17594295 (25 bp)
GTGATATTTTCACCTTTGTTAGAAA
LOC_Os10g33810
Os.3387.1.S1_at--323--3131Chr10:17594222..17594246 (25 bp)
AATTTCTTTGGTTCGTTATCAGCTG
LOC_Os10g33810
Os.3387.1.S1_at--844--6711Chr10:17594212..17594236 (25 bp)
GTTCGTTATCAGCTGGCTTCAGAAT
LOC_Os10g33810
Target Sequence 
GTGACGTGCTCCACGGTGACCGAGTCGTCGCCGTCGTCGGCCGACGGCGACCACCGGCGGCAGCAGCAGCAAACGCAGCA
TGCCGCTGTCAAGGAGGAGAGCTTCAGCTCGGGCGGCGAGCTGCCGGCGGCGGCGGCGGCGCCCACGGCAGCGGCCGACA
TGGACGAGAGCTTCTGGTCGTCGACGGAGGTGACCGGGATGATGGCCGGCCTCGGCGACATGGACGAGGAGCTGGCCATC
GCCGGCACGTCGTCGGCGGCGGCGGCGAGGAGCGACGACATGGAGTTCTGGCTCAAGATGCTCCTCGAGTCCGGCGACAT
GAGGGATTTGGCCGTCTTGTAATCTATTTAATTTAATCATGGCAGAATTAAGCTTGATTAAATTAATTAACTACCGGGAA
GAATTGATAGTATCTCTTCTCTGTTGTTTTTTTTTACCTTCTTTTTTCATCTTTNNNNNNNNANNNNNNAGTGAGAAAAC
GATGGGAAATTCAGGTGATATTTTCACCTTTGTTAGAAAAAGGAATACTGTAGTAGTAGCAAAAATTTCTTTGGTTCGTT
ATCAGCTGGCTTCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis