Browse Element(s) Details


Os.12171.1.S1_at

Description gb:AK104691.1
DB_XREF= gi:32989900
TID=Os.12171.1
CNT=157
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytoplasmic malate dehydrogenase (OSJNBa0055P24.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G07, full insert sequence.
FL= gb:AK104691.1 gb:AF353203.1 gb:AK066396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3380010/11Malate dehydrogenase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33780NANA10+17559108..17559722hypothetical protein
LOC_Os10g33790Os.46464.1.S1_a_at11/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33790Os.51693.1.S1_at1/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33800Os.12171.1.S1_at10/1110+17584440..17588381Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os10g33810Os.3387.1.S1_at11/1110+17594205..17596895Myb-related protein Myb4, putative, expressed
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12171.1.S1_at--541--6191Chr10:17587570..17587594 (25 bp)
GAGGAAGCAATCCAGTGCCCTATCT
LOC_Os10g33800
Os.12171.1.S1_at--925--9691Chr10:17587615..17587639 (25 bp)
TCACATTCGTGACTGGGTTCTTGGC
LOC_Os10g33800
Os.12171.1.S1_at--361--10551Chr10:17587632..17587765 (25 bp)
TTCTTGGCACTCCTGAGGGAACATT
LOC_Os10g33800
Os.12171.1.S1_at--771--211Chr10:17587763..17587787 (25 bp)
ATTTGTCTCCATGGGTGTGTACTCT
LOC_Os10g33800
Os.12171.1.S1_at--798--811Chr10:17587798..17587822 (25 bp)
ATGGTGTGCCTGCTGGTCTGATCTA
LOC_Os10g33800
Os.12171.1.S1_at--878--8831NONE
TGATCTACTCGTTCCCAGGTAACAT
NONE
Os.12171.1.S1_at--65--8531Chr10:17587854..17588004 (25 bp)
TGGACGATTGTTCAGGGTCTCCCGA
LOC_Os10g33800
Os.12171.1.S1_at--886--2791Chr10:17588025..17588049 (25 bp)
AAGATGGACGCGACTGCCCAGGAGC
LOC_Os10g33800
Os.12171.1.S1_at--1108--6171Chr10:17588055..17588079 (25 bp)
GAGGAGAAGACGCTCGCTTACTCAT
LOC_Os10g33800
Os.12171.1.S1_at--302--2391Chr10:17588180..17588204 (25 bp)
AAACTGTTTATCTCAGACCGCTGCA
LOC_Os10g33800
Os.12171.1.S1_at--832--1231Chr10:17588225..17588249 (25 bp)
AGATGCCGTTGCTGGTTTTACTCCA
LOC_Os10g33800
Target Sequence 
GAGGAAGCAATCCAGTGCCCTATCTGCTGCCAGCTCTGCATGCGATCACATTCGTGACTGGGTTCTTGGCACTCCTGAGG
GAACATTTGTCTCCATGGGTGTGTACTCTGATGGNTTTCGTATGGTGTGCCTGCTGGTCTGATCTACTCGTTCCCAGGTA
ACATGCAGTGGTGGCGAATGGACGATTGTTCAGGGTCTCCCGATCGACGAGTTCTCAAGGAAGAAGATGGACGCGACTGC
CCAGGAGCTGTCGGAGGAGAAGACGCTCGCTTACTCATGCCTCAACTAAAACTAAGCAATACCCAGAGGGACAGATAGTG
AGCGATTGCCCGCTCCCGTGTTTTTGAATAAAAGAGACTTTTAAGTTCCATCACATAGAAACTGTTTATCTCAGACCGCT
GCACATCGCGAGATGTGGAGCGCAGATGCCGTTGCTGGTTTTACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis