Browse Element(s) Details


Os.48033.1.S1_at

Description gb:NM_194859.1
DB_XREF= gi:37531077
TID=Os.48033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48033 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0031A07.7), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0589010/11hypothetical protein
LOC_Os04g203201/11Zinc knuckle family protein
LOC_Os03g290351/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g128901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05840Os.21524.2.S1_x_at11/1110+2934353..2935237expressed protein
LOC_Os10g05840Os.46085.1.S1_x_at4/1110+2934353..2935237expressed protein
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48033.1.S1_at--1156--9411Chr10:2956513..2956537 (25 bp)
TCGTGAGGACAGATTACATAGACCC
LOC_Os10g05890
Os.48033.1.S1_at--854--98340Chr11:998345..998658 (25 bp)
TACATAGACCCCAGGACTTCGAAGC
NONE
Os.48033.1.S1_at--44--1931Chr10:2956139..2956163 (25 bp)
ACTGTTAACAACTACGTGGCGGAGC
LOC_Os10g05890
Os.48033.1.S1_at--1042--8651Chr10:2956068..2956092 (25 bp)
TGTGGAGCTGGAGATCGACCGTGCA
LOC_Os10g05890
Os.48033.1.S1_at--259--3871Chr10:2955938..2955962 (25 bp)
CTGTTGCTCCCGGTGGTGCACGAAG
LOC_Os10g05890
Os.48033.1.S1_at--1097--3531Chr10:2955857..2955876 (20 bp)
CATAGTGGAGGTGGACACGGAACCA
LOC_Os10g05890
Os.48033.1.S1_at--895--7711NONE
GGTGGACACGGAACCAAAAGCACAA
NONE
Os.48033.1.S1_at--373--2351Chr10:2955037..2955061 (25 bp)
AAAGCACAAGGATGGCATGTTGCAC
LOC_Os10g05890
Os.48033.1.S1_at--228--8011Chr10:2955028..2955052 (25 bp)
GGATGGCATGTTGCACAACCATATA
LOC_Os10g05890
Os.48033.1.S1_at--1135--3291Chr10:2955015..2955039 (25 bp)
CACAACCATATAGGCCGAGGGATCT
LOC_Os10g05890
Os.48033.1.S1_at--861--10091Chr10:2955005..2955029 (25 bp)
TAGGCCGAGGGATCTATATGATATG
LOC_Os10g05890
Target Sequence 
TCGTGAGGACAGATTACATAGACCCCAGGACTTCGAAGCCGATGCTGACTCTACGCCGATGACTACTCCGGGCTTACCAA
ATTTCACTGTTAACAACTACGTGGCGGAGCTGGAGCGCGCGTTGGAGGTGGTCGAGACGGAGTCCGCGAGGGCGCGTGTG
GAGCTGGAGATCGACCGTGCAGGGAGGAAGGTCGCCGGGGAGGAGATGGACGACGACGACACTGACAGCGCCTCCGCCGC
CGTCTCGCGCCCCGCCGTGCCCGTGGTGGCGGAGGCGACGACCGTGCTGTTGCTCCCGGTGGTGCACGAAGGCGACGGCG
ACGAGGCGCTCGCCCACGCACCGAGGCGGACCAAGACGGACGTGGACGTCGGCATAGTGGAGGTGGACACGGAACCAAAA
GCACAAGGATGGCATGTTGCACAACCATATAGGCCGAGGGATCTATATGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis