Browse Element(s) Details


Os.48057.1.S1_at

Description gb:AK073738.1
DB_XREF= gi:32983761
TID=Os.48057.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064L19, full insert sequence.
FL= gb:AK073738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1339011/11NADH-dependent oxidoreductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified
LOC_Os03g13360OsAffx.3224.1.S1_at11/113+7188527..7189153hypothetical protein
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed
LOC_Os03g13390Os.48057.1.S1_at11/113+7208077..7210783NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os03g13400OsAffx.17040.2.S1_x_at11/113+7216429..7220531Zinc finger, C2H2 type family protein, expressed
LOC_Os03g13410NANA3+7232432..7232834hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48057.1.S1_at--1057--1431Chr03:7210344..7210368 (25 bp)
AGAACCTGGACATCGTCGGATGGGA
LOC_Os03g13390
Os.48057.1.S1_at--74--1331Chr03:7210383..7210407 (25 bp)
AGAGGCAGAGGATCGCCGGCATCCC
LOC_Os03g13390
Os.48057.1.S1_at--452--551Chr03:7210403..7210427 (25 bp)
ATCCCGCAGCGGAAGATCAACCGTG
LOC_Os03g13390
Os.48057.1.S1_at--475--4071Chr03:7210486..7210510 (25 bp)
CGAGATATGAGCACTCGCCGGCGAC
LOC_Os03g13390
Os.48057.1.S1_at--789--4091Chr03:7210535..7210559 (25 bp)
CGACGTGCGTGCTGCTCTGAGGAAC
LOC_Os03g13390
Os.48057.1.S1_at--540--2411Chr03:7210568..7210592 (25 bp)
AAAAACTGCGGCTCTTGACGATCGT
LOC_Os03g13390
Os.48057.1.S1_at--603--2871Chr03:7210606..7210630 (25 bp)
AAGTGTGACGATTTCATCGGCTCTG
LOC_Os03g13390
Os.48057.1.S1_at--1086--4951Chr03:7210634..7210658 (25 bp)
GCATAATTCCGGAGTGCACACGCTA
LOC_Os03g13390
Os.48057.1.S1_at--365--9031Chr03:7210648..7210672 (25 bp)
TGCACACGCTAGCACGTGCGAGAGA
LOC_Os03g13390
Os.48057.1.S1_at--677--31Chr03:7210712..7210736 (25 bp)
ATTGTTATAGACGAGGCCGAGCCGA
LOC_Os03g13390
Os.48057.1.S1_at--857--5911Chr03:7210758..7210782 (25 bp)
GAGCATTTACAGTGCTTCTTACTCG
LOC_Os03g13390
Target Sequence 
AGAACCTGGACATCGTCGGATGGGAGCTGACGGAGGAGGAGAGGCAGAGGATCGCCGGCATCCCGCAGCGGAAGATCAAC
CGTGCCCTCCGCTTCGTCTCCGACCACGGGCCCTACAAGTCGCTCGACGACCTCTGGGACGGCGAGATATGAGCACTCGC
CGGCGACCGCTTCGTGTTTCCAGGCGCCGGCCGACGTGCGTGCTGCTCTGAGGAACGTAACAACAAAAACTGCGGCTCTT
GACGATCGTGTTGAATAAAGCAAAGTGTGACGATTTCATCGGCTCTGNTTGCATAATTCCGGAGTGCACACGCTAGCACG
TGCGAGAGAGAGAGATATANNGGTACATCGAGCGTGTCAAATCGATCAAAATTGTTATAGACGAGGCCGAGCCGAGCCAA
GGAAAAGCTTCCATTAGAGCATTTACAGTGCTTCTTACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis