Browse Element(s) Details


OsAffx.25081.1.S1_at

Description tigr:9631.m01267
TID=OsAffx.25081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1337010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed
LOC_Os03g13340OsAffx.3223.1.S1_at11/113+7178091..7179239hypothetical protein
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified
LOC_Os03g13360OsAffx.3224.1.S1_at11/113+7188527..7189153hypothetical protein
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed
LOC_Os03g13390Os.48057.1.S1_at11/113+7208077..7210783NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os03g13400OsAffx.17040.2.S1_x_at11/113+7216429..7220531Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25081.1.S1_at--764--6451Chr03:7195029..7195051 (23 bp)
GATCAAGCACGCAGATACTTTGGCA
LOC_Os03g13370
OsAffx.25081.1.S1_at--112--6791Chr03:7195768..7195792 (25 bp)
GTTAGATGGGACATTTCCTCCTGCT
LOC_Os03g13370
OsAffx.25081.1.S1_at--620--3811Chr03:7195785..7195809 (25 bp)
CTCCTGCTTGGATTGGTACTGGTAT
LOC_Os03g13370
OsAffx.25081.1.S1_at--98--9071Chr03:7195849..7195873 (25 bp)
TGCATTTCGGACAGCAGCTCGGCTA
LOC_Os03g13370
OsAffx.25081.1.S1_at--450--1591NONE
AGCTCGGCTATTTCCTGGATGTCAT
NONE
OsAffx.25081.1.S1_at--75--5051Chr03:7196497..7196898 (25 bp)
GCAGAGCAGTTCTTCACGCAAGCAA
LOC_Os03g13370
OsAffx.25081.1.S1_at--557--1491Chr03:7196894..7196918 (25 bp)
AGCAAAATCTATCTGCCCATCTGAT
LOC_Os03g13370
OsAffx.25081.1.S1_at--313--9171Chr03:7196907..7196931 (25 bp)
TGCCCATCTGATCCGCTTATATATA
LOC_Os03g13370
OsAffx.25081.1.S1_at--1150--4951Chr03:7197876..7197900 (25 bp)
GCATACTTCATCCTCCTTGAATGAA
LOC_Os03g13370
OsAffx.25081.1.S1_at--459--931Chr03:7198537..7198561 (25 bp)
AGGCACTCACCTTTCAAACCAAAAG
LOC_Os03g13370
OsAffx.25081.1.S1_at--619--7811Chr03:7198578..7198602 (25 bp)
GGTCTTGCTTATACTTACCACCTTA
LOC_Os03g13370
Target Sequence 
GATCAAGCACGCAGATACTTTGGCAAAGCTACAGGGTTAGATGGGACATTTCCTCCTGCTTGGATTGGTACTGGTATTGC
TTATGCTGCACAGGAGGAGGGTGATCAAGCAATGGCTGCATTTCGGACAGCAGCTCGGCTATTTCCTGGATGTCATCTGC
CAACTTTATACATGGGCATGCAATATTTGCGAATGCACAATTTCAAACTTGCAGAGCAGTTCTTCACGCAAGCAAAATCT
ATCTGCCCATCTGATCCGCTTATATATAACGAGATGGGGGTTGTAGCTTATAATATGAAAGAGTATCAAAAAGCAGTTCA
GTGGTTTGAGCTAACACTGGAGCATACTTCATCCTCCTTGAATGAAATGTGGGAACCAACATTGGTGAATCTTGGGCATG
CATTGCGGAAACTCAAGAAATATCAAAAGGCAATATCATATTATGAAAAGGCACTCACCTTTCAAACCAAAAGTTTGAGC
GCGTTTGCTGGTCTTGCTTATACTTACCACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis