Browse Element(s) Details


Os.48077.1.A1_at

Description gb:CR289953
DB_XREF= gi:44676519
DB_XREF=CR289953
CLONE=y714g08p3
TID=Os.48077.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48077 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:Q05762 (A.thaliana) DRT1_ARATH BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2606010/11Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26010NANA12+15108914..15110887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26020OsAffx.31885.2.S1_x_at11/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.3.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.1.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26030OsAffx.7704.1.S1_s_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26030OsAffx.7704.1.S1_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26040OsAffx.19831.1.S1_at11/1112+15124017..15125336expressed protein
LOC_Os12g26050OsAffx.19832.1.S1_at11/1112+15129078..15129791hypothetical protein
LOC_Os12g26060Os.48077.1.A1_at10/1112+15131743..15137678Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os12g26070Os.47463.1.S1_x_at6/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26070Os.14491.2.S1_x_at5/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26080NANA12+15146443..15151689transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48077.1.A1_at--254--4411Chr12:15135328..15135352 (25 bp)
GCCACCATGCCACATGTTTGCTCAG
LOC_Os12g26060
Os.48077.1.A1_at--622--7651Chr12:15136426..15136450 (25 bp)
GGGAGTTGTCATGCCAGATGTACCA
LOC_Os12g26060
Os.48077.1.A1_at--121--2231NONE
ACAAGTGTGTGATCTTTCTCCTGGG
NONE
Os.48077.1.A1_at--283--7391Chr12:15137236..15137260 (25 bp)
GTGATGCCCATGTTTACCGTACGCA
LOC_Os12g26060
Os.48077.1.A1_at--5--751Chr12:15137245..15137269 (25 bp)
ATGTTTACCGTACGCATGTTGAAGC
LOC_Os12g26060
Os.48077.1.A1_at--1095--3411Chr12:15137470..15137494 (25 bp)
CAGACTTCAAACTGGTTCGCTATGA
LOC_Os12g26060
Os.48077.1.A1_at--527--6711Chr12:15137484..15137508 (25 bp)
GTTCGCTATGATCCTCACCATAAGA
LOC_Os12g26060
Os.48077.1.A1_at--408--851Chr12:15137520..15137544 (25 bp)
ATGGCAGTATGAGTTGGTAGCTTCT
LOC_Os12g26060
Os.48077.1.A1_at--262--7851Chr12:15137535..15137559 (25 bp)
GGTAGCTTCTATTTGCAGACTTCTG
LOC_Os12g26060
Os.48077.1.A1_at--393--6611Chr12:15137590..15137614 (25 bp)
GATTGGATTGAAGTGCCTTGTCATC
LOC_Os12g26060
Os.48077.1.A1_at--370--9191Chr12:15137603..15137627 (25 bp)
TGCCTTGTCATCCTGTCTTACAAAT
LOC_Os12g26060
Target Sequence 
GCCACCATGCCACATGTTTGCTCAGTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGATGTACCAACGCTCTGCTGATA
TGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACAAGTGTGTGATCTTTCTCCT
GGGGATTTTGTCCATGTTATAGGTGATGCCCATGTTTACCGTACGCATGTTGAAGCGTTAGAGGAGCNAAATGCGGAAGC
AGNCTAAACCATTCCCTATTTTGAAGATAAATCCTGTGAAGAAAGATATTGATTCTTTTGTAACATCAGACTTCAAACTG
GTTCGCTATGATCCTCACCATAAGATAGAAATGAAGATGGCAGTATGAGTTGGTAGCTTCTATTTGCAGACTTCTGTTGT
ATATTTGATGGCAAATTGATATGGTTGATTGGATTGAAGTGCCTTGTCATCCTGTCTTACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48077.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis