Browse Element(s) Details


Os.48090.1.S1_at

Description gb:AK099692.1
DB_XREF= gi:32984901
TID=Os.48090.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073N05, full insert sequence.
FL= gb:AK099692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2888011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860OsAffx.5142.1.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28860Os.53842.2.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28870OsAffx.4958.1.S1_at11/116+16460788..16461818hypothetical protein
LOC_Os06g28870OsAffx.14940.1.S1_x_at1/116+16460788..16461818hypothetical protein
LOC_Os06g28880Os.48090.1.S1_at11/116+16470615..16480722expressed protein
LOC_Os06g28880Os.46610.1.S1_x_at2/116+16470615..16480722expressed protein
LOC_Os06g28880Os.24082.1.S1_at1/116+16470615..16480722expressed protein
LOC_Os06g28890OsAffx.15653.1.S1_at11/116+16480196..16484467hypothetical protein
LOC_Os06g28890OsAffx.3347.1.S1_at1/116+16480196..16484467hypothetical protein
LOC_Os06g28900NANA6+16487872..16488309hypothetical protein
LOC_Os06g28910NANA6+16489582..16490124hypothetical protein
LOC_Os06g28920NANA6+16490519..16493785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28930NANA6+16495105..16497938hypothetical protein
LOC_Os06g28940Os.54764.1.S1_at1/116+16501253..16502407hypothetical protein
LOC_Os06g28950Os.5170.1.S1_at11/116+16503516..16504370FKBP-type peptidyl-prolyl cis-trans isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48090.1.S1_at--835--51Chr06:16472970..16472994 (25 bp)
ATTGATGTCCGTACATGTGTGCGGC
LOC_Os06g28880
Os.48090.1.S1_at--1118--9511Chr06:16472940..16472964 (25 bp)
TCTCATCCATGTGTGTCAACCGAAT
LOC_Os06g28880
Os.48090.1.S1_at--496--7091Chr06:16472926..16472950 (25 bp)
GTCAACCGAATGTGCCGCTGTTCTT
LOC_Os06g28880
Os.48090.1.S1_at--763--10771Chr06:16472293..16472317 (25 bp)
TTGATGCTCATGTCCTTGATGCTCA
LOC_Os06g28880
Os.48090.1.S1_at--702--3231Chr06:16472251..16472275 (25 bp)
CAAGAGGTTGTCGTTGCAGATTTCT
LOC_Os06g28880
Os.48090.1.S1_at--991--5031Chr06:16472236..16472260 (25 bp)
GCAGATTTCTTGTTTGCTATGATCA
LOC_Os06g28880
Os.48090.1.S1_at--1060--5351Chr06:16470947..16470971 (25 bp)
GAAGATGTGTCGTCGGCCAGAAACT
LOC_Os06g28880
Os.48090.1.S1_at--657--1391Chr06:16470916..16470940 (25 bp)
AGACTTGAGATTCTACATGCTGCTG
LOC_Os06g28880
Os.48090.1.S1_at--759--6591Chr06:16470851..16470875 (25 bp)
GATTGCTTAGTCACTTCGATCGAAA
LOC_Os06g28880
Os.48090.1.S1_at--146--1251Chr06:16470817..16470841 (25 bp)
AGTTGTCAGGAATTTCCACTCCAAA
LOC_Os06g28880
Os.48090.1.S1_at--248--9151Chr06:16470657..16470681 (25 bp)
TGCCCGATCCGGAGCCAAAAAATTG
LOC_Os06g28880
Target Sequence 
ATTGATGTCCGTACATGTGTGCGGCAACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCA
AATTCTTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTCAAAAGCGTAGGCATG
ATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCATGATGACTCTGAGGAAATTGTTCCACTGAGGAAGATG
TGTCGTCGGCCAGAAACTGACTACAGACTTGAGATTCTACATGCTGCTGGAGCAGCAAATGCTGCTAAAGAGGCTGTGGT
TGATTCGGTGATTGCTTAGTCACTTCGATCGAAAGGGTAATATAGTTGTCAGGAATTTCCACTCCAAACATAGTGGTTGC
TTAATTAGGACCCAATGTGATTGTTGTATCATTGACTTGATTTCTATTGCACAAATTAGGTATGGCACACAAATTTTAGT
TTACATATTATGCCAAAAAGTGTTGAAGCGGCTATGGATCGGGTGCCCGATCCGGAGCCAAAAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis