Browse Element(s) Details

Os.48137.1.A1_at

Description

gb:CR278306
DB_XREF= gi:44664872
DB_XREF=CR278306
CLONE=p520g02p3
TID=Os.48137.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48137 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_198898.2 (A.thaliana) BAA92828.1) (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50910	11/11	Phosphatidylinositol 3- and 4-kinase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50860	Os.9925.1.S1_at	10/11	6	+	30769704..30772815	expressed protein
LOC_Os06g50870	Os.53776.1.S1_at	10/11	6	+	30773203..30775617	DNL zinc finger family protein, expressed
LOC_Os06g50880	Os.18869.1.S1_at	11/11	6	+	30775910..30778654	transducin family protein, putative, expressed
LOC_Os06g50890	Os.10989.2.S1_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50890	Os.10989.1.S1_a_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50910	Os.48137.1.A1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.49175.1.S1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.24117.1.A1_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	OsAffx.31869.4.S1_x_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900	Os.11409.1.S1_at	11/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_x_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50920	Os.53650.1.S1_at	11/11	6	+	30816442..30822355	protein kinase family protein, putative, expressed
LOC_Os06g50930	Os.11287.1.S1_at	11/11	6	+	30822453..30824784	Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940	Os.56682.1.S1_at	11/11	6	+	30827275..30829400	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950	Os.27247.1.S1_at	11/11	6	+	30837055..30838936	GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007004	biological_process	telomerase-dependent telomere maintenance
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0043247	biological_process	telomere maintenance in response to DNA damage
GO:0004428	molecular_function	inositol or phosphatidylinositol kinase activity
GO:0016303	molecular_function	phosphatidylinositol 3-kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.48137.1.A1_at--644--171	1	Chr06:30803042..30803062 (21 bp)	ACCACCCTGCTTATTATATCTGTTC	LOC_Os06g50910
Os.48137.1.A1_at--520--907	1	Chr06:30803035..30803059 (25 bp)	TGCTTATTATATCTGTTCTACTCGT	LOC_Os06g50910
Os.48137.1.A1_at--511--673	1	Chr06:30803021..30803045 (25 bp)	GTTCTACTCGTATTTATGTTTGACC	LOC_Os06g50910
Os.48137.1.A1_at--334--75	1	Chr06:30803006..30803030 (25 bp)	ATGTTTGACCTGGAACTCTGGAAGA	LOC_Os06g50910
Os.48137.1.A1_at--1066--107	1	Chr06:30802965..30802989 (25 bp)	AGGGCAGTTAGCTAGTGGCATTTTG	LOC_Os06g50910
Os.48137.1.A1_at--621--849	1	Chr06:30802950..30802974 (25 bp)	TGGCATTTTGTAACTGGCCGGCCCT	LOC_Os06g50910
Os.48137.1.A1_at--141--377	1	Chr06:30802927..30802951 (25 bp)	CTCTAGCTGCCATATTCCTGTGAAT	LOC_Os06g50910
Os.48137.1.A1_at--792--1021	1	Chr06:30802915..30802939 (25 bp)	TATTCCTGTGAATGCCTGCCAATGC	LOC_Os06g50910
Os.48137.1.A1_at--485--447	1	Chr06:30802902..30802926 (25 bp)	GCCTGCCAATGCATGTCACTTAACA	LOC_Os06g50910
Os.48137.1.A1_at--964--981	1	Chr06:30802882..30802906 (25 bp)	TAACATACTCTTGGACTCTTGGGCC	LOC_Os06g50910
Os.48137.1.A1_at--864--1083	1	Chr06:30802864..30802888 (25 bp)	TTGGGCCGTCCATAGTATTATTACT	LOC_Os06g50910

Target Sequence

ACCACCCTGCTTATTATATCTGTTCTACTCGTATTTATGTTTGACCTGGAACTCTGGAAGAGGTAGGCAGGAACCGGAGG
GCAGTTAGCTAGTGGCATTTTGTAACTGGCCGGCCCTCTAGCTGCCATATTCCTGTGAATGCCTGCCAATGCATGTCACT
TAACATACTCTTGGACTCTTGGGCCGTCCATAGTATTATTACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis