Browse Element(s) Details


Os.4824.1.A1_s_at

Description gb:CR280915
DB_XREF= gi:44667481
DB_XREF=CR280915
CLONE=y733b12p3
TID=Os.4824.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4824 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0987011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4824.1.A1_s_at--18--1211Chr10:5107407..5107431 (25 bp)
AGTTTCCACTGCTGATGGCGGTGCA
LOC_Os10g09870
Os.4824.1.A1_s_at--633--2551Chr10:5107375..5107399 (25 bp)
AACTGCATGCCATTTGTCATCTATT
LOC_Os10g09870
Os.4824.1.A1_s_at--548--7311Chr10:5107338..5107362 (25 bp)
GTGCTTCAGAGCTTTAGGGCGATCA
LOC_Os10g09870
Os.4824.1.A1_s_at--318--8371Chr10:5107321..5107345 (25 bp)
GGCGATCACCTGTTTGGTTGCAGCA
LOC_Os10g09870
Os.4824.1.A1_s_at--1081--5031Chr10:5107299..5107323 (25 bp)
GCAGATATCTCTGTTTCCACATTAT
LOC_Os10g09870
Os.4824.1.A1_s_at--675--9211Chr10:5107284..5107308 (25 bp)
TCCACATTATGTTCTTCGAGCTTTA
LOC_Os10g09870
Os.4824.1.A1_s_at--721--6411Chr10:5107255..5107279 (25 bp)
GATCTGCTGTTTGGTTGCAGGCAGC
LOC_Os10g09870
Os.4824.1.A1_s_at--671--5051Chr10:5107235..5107259 (25 bp)
GCAGCAGATGTCTTGGTTGGTTTAA
LOC_Os10g09870
Os.4824.1.A1_s_at--281--4551Chr10:5107204..5107228 (25 bp)
GCTTTGAACCTGCTTCCTTAAGTAG
LOC_Os10g09870
Os.4824.1.A1_s_at--1061--9771Chr10:5107186..5107210 (25 bp)
TAAGTAGTGTTTCTTCCACCTGTTT
LOC_Os10g09870
Os.4824.1.A1_s_at--482--3631Chr10:5107174..5107198 (25 bp)
CTTCCACCTGTTTTGCTAATTTGCT
LOC_Os10g09870
Target Sequence 
AGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAG
CTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTANGGTGATCTGCT
GTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCAC
CTGTTTTGCTAATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4824.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis