Browse Element(s) Details


Os.48260.1.S1_at

Description gb:AK103657.1
DB_XREF= gi:32988866
TID=Os.48260.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135G19, full insert sequence.
FL= gb:AK110321.1 gb:AK103657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os02g52490Os.48260.1.S1_at11/112+32113141..32114928expressed protein
LOC_Os02g52490Os.48260.1.S2_at9/112+32113141..32114928expressed protein
LOC_Os02g52500OsAffx.24835.1.S1_at11/112+32116910..32118049hypothetical protein
LOC_Os02g52510OsAffx.12611.1.S1_at10/112+32120055..32128825DNA repair protein RAD54, putative
LOC_Os02g52520NANA2+32130555..32136709retrotransposon protein, putative, unclassified
LOC_Os02g52530NANA2+32137337..32140628retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48260.1.S1_at--823--2411Chr02:32114109..32114133 (25 bp)
AAAACACACATGGAACTCTCGTCTC
LOC_Os02g52490
Os.48260.1.S1_at--596--3771Chr02:32114094..32114118 (25 bp)
CTCTCGTCTCTGTCTCATATTGTGA
LOC_Os02g52490
Os.48260.1.S1_at--178--8691Chr02:32114074..32114098 (25 bp)
TGTGACCATCCTCTTGCATTGTACT
LOC_Os02g52490
Os.48260.1.S1_at--981--4931Chr02:32114059..32114083 (25 bp)
GCATTGTACTTGTCTCAAAGGCTAG
LOC_Os02g52490
Os.48260.1.S1_at--1131--10031Chr02:32114028..32114052 (25 bp)
TAGATGATTGTGCTCGGTTGCTTGT
LOC_Os02g52490
Os.48260.1.S1_at--393--3971Chr02:32114014..32114038 (25 bp)
CGGTTGCTTGTGTGCTAGATGGCCA
LOC_Os02g52490
Os.48260.1.S1_at--183--4971Chr02:32113949..32113973 (25 bp)
GCATAAGTGCTGTCTCTCTAGCTAG
LOC_Os02g52490
Os.48260.1.S1_at--178--3891Chr02:32113924..32113948 (25 bp)
CTGTCCACTAGATCCATATCAGTCT
LOC_Os02g52490
Os.48260.1.S1_at--1119--231Chr02:32113909..32113933 (25 bp)
ATATCAGTCTTTGCTTCCTCTTTCT
LOC_Os02g52490
Os.48260.1.S1_at--472--5071Chr02:32113838..32113862 (25 bp)
GCAGCGCTTGTGTAGATCGAAAATT
LOC_Os02g52490
Os.48260.1.S1_at--205--7771Chr02:32113809..32113833 (25 bp)
GGTGCAATCATTAGTCTGCCAGATG
LOC_Os02g52490
Target Sequence 
AAAACACACATGGAACTCTCGTCTCTGTCTCATATTGTGACCATCCTCTTGCATTGTACTTGTCTCAAAGGCTAGTTTTT
GTAGATGATTGTGCTCGGTTGCTTGTGTGCTAGATGGCCAGTGTGTGCTGAAGAGCAAACAATTGTGTNTTTTTTTTCTT
GCATAAGTGCTGTCTCTCTAGCTAGCTGTCCACTAGATCCATATCAGTCTTTGCTTCCTCTTTCTTCTTTTTTTTTTTGT
TTCTTTTTTCCCCCTCCANCCTGTACAAAATGCAGCGCTTGTGTAGATCGAAAATTTTATGGTGCAATCATTAGTCTGCC
AGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis