Browse Element(s) Details


OsAffx.24835.1.S1_at

Description tigr:9630.m05177
TID=OsAffx.24835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5250011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os02g52490Os.48260.1.S1_at11/112+32113141..32114928expressed protein
LOC_Os02g52490Os.48260.1.S2_at9/112+32113141..32114928expressed protein
LOC_Os02g52500OsAffx.24835.1.S1_at11/112+32116910..32118049hypothetical protein
LOC_Os02g52510OsAffx.12611.1.S1_at10/112+32120055..32128825DNA repair protein RAD54, putative
LOC_Os02g52520NANA2+32130555..32136709retrotransposon protein, putative, unclassified
LOC_Os02g52530NANA2+32137337..32140628retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24835.1.S1_at--298--8591Chr02:32116959..32116983 (25 bp)
TGGTAGCTTTCTTGCCCTGGATTAG
LOC_Os02g52500
OsAffx.24835.1.S1_at--673--6551Chr02:32116978..32117002 (25 bp)
GATTAGGGACCAGCAGTGCCTGCAA
LOC_Os02g52500
OsAffx.24835.1.S1_at--332--5031Chr02:32116990..32117014 (25 bp)
GCAGTGCCTGCAAAGACTAGATGTT
LOC_Os02g52500
OsAffx.24835.1.S1_at--900--1351Chr02:32117003..32117027 (25 bp)
AGACTAGATGTTGAGGACCTGAAGA
LOC_Os02g52500
OsAffx.24835.1.S1_at--903--5371Chr02:32117023..32117047 (25 bp)
GAAGAACACAGTAGATGATCCCAGA
LOC_Os02g52500
OsAffx.24835.1.S1_at--89--1311Chr02:32117035..32117059 (25 bp)
AGATGATCCCAGAAAGCGACCTTCC
LOC_Os02g52500
OsAffx.24835.1.S1_at--234--1651Chr02:32117049..32117073 (25 bp)
AGCGACCTTCCTTACAAATTGATAA
LOC_Os02g52500
OsAffx.24835.1.S1_at--824--5551Chr02:32117090..32117474 (25 bp)
GAAAGCGACTCCATGTTACCATTAG
LOC_Os02g52500
OsAffx.24835.1.S1_at--732--4311Chr02:32117468..32117492 (25 bp)
CCATTAGAAACACTGGATAGCTTAA
LOC_Os02g52500
OsAffx.24835.1.S1_at--389--7951Chr02:32117482..32117506 (25 bp)
GGATAGCTTAACAATGTCCAGAAGT
LOC_Os02g52500
OsAffx.24835.1.S1_at--248--2871Chr02:32117503..32117527 (25 bp)
AAGTGGAATCAGATGGGCACCAACA
LOC_Os02g52500
Target Sequence 
TGGTAGCTTTCTTGCCCTGGATTAGGGACCAGCAGTGCCTGCAAAGACTAGATGTTGAGGACCTGAAGAACACAGTAGAT
GATCCCAGAAAGCGACCTTCCTTACAAATTGATAAGTATGCTGTACAAGGAGAAAGCGACTCCATGTTACCATTAGAAAC
ACTGGATAGCTTAACAATGTCCAGAAGTGGAATCAGATGGGCACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis