Browse Element(s) Details


Os.48420.1.A1_at

Description gb:AK062300.1
DB_XREF= gi:32972318
TID=Os.48420.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G12, full insert sequence.
FL= gb:AK062300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2290011/11transcriptional activator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed
LOC_Os03g22860NANA3+13194202..13195149hypothetical protein
LOC_Os03g22870Os.6507.1.S1_at11/113+13196884..13201064SAC3/GANP family protein, expressed
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0000786cellular_componentnucleosome
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48420.1.A1_at--309--2411Chr03:13226152..13226176 (25 bp)
AAAAGATCGGACTCCTTCAGCCTAA
LOC_Os03g22900
Os.48420.1.A1_at--50--2951Chr03:13226219..13226243 (25 bp)
AAGGCTAGTGTGATCTATCCTGCCC
LOC_Os03g22900
Os.48420.1.A1_at--974--3691Chr03:13226233..13226257 (25 bp)
CTATCCTGCCCGATTTATGACATGG
LOC_Os03g22900
Os.48420.1.A1_at--264--5231Chr03:13226290..13226314 (25 bp)
GAATAGTCGTTGGATCTTCCTGAAG
LOC_Os03g22900
Os.48420.1.A1_at--213--8691Chr03:13226341..13226365 (25 bp)
TGTGCACATCTTTTTCGGAAGCCTG
LOC_Os03g22900
Os.48420.1.A1_at--97--931Chr03:13226401..13226425 (25 bp)
AGGCATCAGTGCAGTGGCATCGGTT
LOC_Os03g22900
Os.48420.1.A1_at--1144--4951Chr03:13226417..13226441 (25 bp)
GCATCGGTTGCTGTTAATCGTGACA
LOC_Os03g22900
Os.48420.1.A1_at--727--791Chr03:13226441..13226465 (25 bp)
ATGGGCGAATCCTCTAGCTGTTGCT
LOC_Os03g22900
Os.48420.1.A1_at--270--1391Chr03:13226485..13226509 (25 bp)
AGACCTGACCGCTGATATCTGTGAT
LOC_Os03g22900
Os.48420.1.A1_at--768--5011Chr03:13226640..13226664 (25 bp)
GCAGGAAAGCTGCTGTGCTTCCAAA
LOC_Os03g22900
Os.48420.1.A1_at--1026--5451Chr03:13226689..13226713 (25 bp)
GAACGTCTATGCTAATCCCTATGCT
LOC_Os03g22900
Target Sequence 
AAAAGATCGGACTCCTTCAGCCTAACTGACNAATTAATCGGATAACAAACACAGGGTGCTAAATGGCAAGGCTAGTGTGA
TCTATCCTGCCCGATTTATGACATGGGCACGACAGATTGCATGGTTCATTGTCAAGAGGAATAGTCGTTGGATCTTCCTG
AAGGTGTCACACAGTTCAATAAGTGTTTATGTGCACATCTTTTTCGGAAGCCTGGGAACTGGGTTAGTTGTATATTCGAT
TGTGTTAGAAGGCATCAGTGCAGTGGCATCGGTTGCTGTTAATCGTGACATGGGCGAATCCTCTAGCTGTTGCTGCGGAT
GTTGGAATTGTGGAGACCTGACCGCTGATATCTGTGATGCTGGCTGTGGCCATTATGTAAATAATCATGNAAAAATATTG
CATCACATATAGAAATAATTTTGCCGTGTAAAGAGNGTAGGTNGACTNNATNATNANACCNATNANAGTNTTNTGTNATT
NGATNAGCTNGAAAGAGAACATAGCAGGAAAGCTGCTGTGCTTCCAAATTGGAAACATTTTCGACCATTTATGAACGTCT
ATGCTAATCCCTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48420.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis