Browse Element(s) Details


Os.48661.1.S1_at

Description gb:AK064613.1
DB_XREF= gi:32974631
TID=Os.48661.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C02, full insert sequence.
FL= gb:AK100138.1 gb:AK060939.1 gb:AK064613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0991011/11Phosphopantothenoylcysteine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein
LOC_Os06g09910Os.48661.1.S1_at11/116+5053304..5055835Phosphopantothenoylcysteine decarboxylase, putative, expressed
LOC_Os06g09920NANA6+5056623..5057036hypothetical protein
LOC_Os06g09930Os.39747.1.S1_at11/116+5059665..5063953Identical to a putative G-protein-coupled receptor from , putative, expressed
LOC_Os06g09940OsAffx.27540.1.S1_at11/116+5067260..5067577hypothetical protein
LOC_Os06g09950OsAffx.15341.1.S1_at11/116+5070901..5071113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042538biological_processhyperosmotic salinity response
GO:0009055molecular_functionelectron carrier activity
GO:0010181molecular_functionFMN binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48661.1.S1_at--599--4311Chr06:5053869..5053893 (25 bp)
CCTTTTCTTTTTGTGCAGCATGCGT
LOC_Os06g09910
Os.48661.1.S1_at--99--2511Chr06:5053831..5053855 (25 bp)
AACTTGTCTGGTGTGCAAATGCTGC
LOC_Os06g09910
Os.48661.1.S1_at--232--2291Chr06:5053815..5053839 (25 bp)
AAATGCTGCACTTTCCTGCTTGGAT
LOC_Os06g09910
Os.48661.1.S1_at--36--3611Chr06:5053797..5053821 (25 bp)
CTTGGATACGCAGCCGCTAAAGCTT
LOC_Os06g09910
Os.48661.1.S1_at--1058--671Chr06:5053768..5053792 (25 bp)
ATGACGGCTTACCTGAATCCTTTGT
LOC_Os06g09910
Os.48661.1.S1_at--196--5271Chr06:5053754..5053778 (25 bp)
GAATCCTTTGTTTCGATCTACGCTT
LOC_Os06g09910
Os.48661.1.S1_at--1071--7631Chr06:5053548..5053572 (25 bp)
GGTGGCGTTTCAAGTTTAGTCATCA
LOC_Os06g09910
Os.48661.1.S1_at--612--9611Chr06:5053526..5053550 (25 bp)
TCATCTGCACCCCACAAGGATATGG
LOC_Os06g09910
Os.48661.1.S1_at--310--8931Chr06:5053467..5053491 (25 bp)
TGACCGTTCAACATCGACTCTTTTG
LOC_Os06g09910
Os.48661.1.S1_at--738--5711Chr06:5053452..5053476 (25 bp)
GACTCTTTTGGATAATTCTGCCTAT
LOC_Os06g09910
Os.48661.1.S1_at--818--6651Chr06:5053342..5053366 (25 bp)
GTTGAACTGCATATGGTTGGCCATG
LOC_Os06g09910
Target Sequence 
CCTTTTCTTTTTGTGCAGCATGCGTATATTGGAAGGTGAACTTGTCTGGTGTGCAAATGCTGCACTTTCCTGCTTGGATA
CGCAGCCGCTAAAGCTTGGACATGACGGCTTACCTGAATCCTTTGTTTCGATCTACGCTTCCCTCTCGTTGATGACTGGT
GATTTGTCGCATGGATCACTTGAAGCTGGTGCAGGAACAAACTGAGAATGACATGTGGCAGGCAAGCCCTGTGAATGCAA
AAAAGAAAATGGTGACTAAGCAAGAAGATAATGCCAAGTTCAGATAAGCATTTGGTAGGGGATTGCAACAAGCTGGGTGA
AGGTGGCGTTTCAAGTTTAGTCATCATCTGCACCCCACAAGGATATGGTGAGGAATGGTTTACCGATCAATTGGAAAGAT
TATGACCGTTCAACATCGACTCTTTTGGATAATTCTGCCTATATGGTATGCATGATAAAGCTCAACTAGAGGAGTAACAC
AAAAAATGCCATGCATATATTTATCAATCAGCATGACTGAACTTGAAGTTGAACTGCATATGGTTGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis