Browse Element(s) Details


Os.12115.1.S1_at

Description gb:AK058843.1
DB_XREF= gi:32968861
TID=Os.12115.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-F02, full insert sequence.
FL= gb:AK058843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0990011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein
LOC_Os06g09910Os.48661.1.S1_at11/116+5053304..5055835Phosphopantothenoylcysteine decarboxylase, putative, expressed
LOC_Os06g09920NANA6+5056623..5057036hypothetical protein
LOC_Os06g09930Os.39747.1.S1_at11/116+5059665..5063953Identical to a putative G-protein-coupled receptor from , putative, expressed
LOC_Os06g09940OsAffx.27540.1.S1_at11/116+5067260..5067577hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12115.1.S1_at--900--711Chr06:5044325..5044349 (25 bp)
ATGATTGGGATGTTGAGCTCGTCAA
LOC_Os06g09900
Os.12115.1.S1_at--1124--4991Chr06:5044248..5044272 (25 bp)
GCATGTGTAGATTGGCTCTCAAAGA
LOC_Os06g09900
Os.12115.1.S1_at--719--4991Chr06:5044179..5044203 (25 bp)
GCATGATTAAGCTCCGTGTGATCGA
LOC_Os06g09900
Os.12115.1.S1_at--322--9291Chr06:5044167..5044191 (25 bp)
TCCGTGTGATCGAGCATGAAGTTGT
LOC_Os06g09900
Os.12115.1.S1_at--200--10751Chr06:5044132..5044156 (25 bp)
TTGCAATTTGTAACTGTGTCCAGTT
LOC_Os06g09900
Os.12115.1.S1_at--337--3431Chr06:5044112..5044136 (25 bp)
CAGTTGTTTTGGACACCGTTCAATT
LOC_Os06g09900
Os.12115.1.S1_at--890--3171Chr06:5044091..5044115 (25 bp)
AATTGGATATTAATTGTGGCCACCT
LOC_Os06g09900
Os.12115.1.S1_at--737--7511Chr06:5044076..5044100 (25 bp)
GTGGCCACCTTGTAAATTAGTAGTA
LOC_Os06g09900
Os.12115.1.S1_at--38--1371Chr06:5044034..5044058 (25 bp)
AGAGCTGTAAGTTTCGTTGTACCAT
LOC_Os06g09900
Os.12115.1.S1_at--1087--731Chr06:5043968..5043992 (25 bp)
ATGTTTATGTACTCTCTTCGCTTGT
LOC_Os06g09900
Os.12115.1.S1_at--747--9351Chr06:5043951..5043975 (25 bp)
TCGCTTGTGCTATAATTCCTCTGAA
LOC_Os06g09900
Target Sequence 
ATGATTGGGATGTTGAGCTCGTCAATGGCGAGTTTATTATTGAATNCAAATTAATAATAAATTAAGAATAAACTTGGGAG
CATGTGTAGATTGGCTCTCAAAGAATAATAATAATATGTGATCTGATTGATGATTGCTCGAGAGAGGAGCATGATTAAGC
TCCGTGTGATCGAGCATGAAGTTGTGTGTGTAGCANTTGCAATTTGTAACTGTGTCCAGTTGTTTTGGACACCGTTCAAT
TGGATATTAATTGTGGCCACCTTGTAAATTAGTAGTAGTTGAAAACATTGTATTAGAGCTGTAAGTTTCGTTGTACCATG
TTTGTACATGGGGTTTGTAATGTTAGCTANTTCAAAAANTCCATGTTTATGTACTCTCTTCGCTTGTGCTATAATTCCTC
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis