Browse Element(s) Details


Os.8116.1.S1_at

Description gb:AK071363.1
DB_XREF= gi:32981386
TID=Os.8116.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092F04, full insert sequence.
FL= gb:AK071363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0986011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09800OsAffx.27539.1.S1_at11/116+4994259..4994861hypothetical protein
LOC_Os06g09810OsAffx.15338.1.S1_at11/116+4997065..4997688AP2 domain containing protein
LOC_Os06g09820OsAffx.15339.1.S1_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09820OsAffx.15339.1.S1_s_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09830Os.9561.1.S1_at11/116+5004425..5007057Protein of unknown function containing protein, expressed
LOC_Os06g09840Os.16603.1.S1_at11/116+5007202..5009735expressed protein
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8116.1.S1_at--590--10171Chr06:5018809..5018833 (25 bp)
TATACCTCCAGAACGCCAAGGGCGG
LOC_Os06g09860
Os.8116.1.S1_at--881--4851Chr06:5018875..5018899 (25 bp)
GCTACGAGCGGGACCTGTTCGACAA
LOC_Os06g09860
Os.8116.1.S1_at--634--2951Chr06:5018898..5018922 (25 bp)
AAGGCCATCACGTCGGCGTGGAAGT
LOC_Os06g09860
Os.8116.1.S1_at--81--1191Chr06:5019112..5019136 (25 bp)
AGTACGTGCGAGACGGGTCCATGCA
LOC_Os06g09860
Os.8116.1.S1_at--268--651Chr06:5019132..5019156 (25 bp)
ATGCAGCGGATCACAAGCGTCGGCG
LOC_Os06g09860
Os.8116.1.S1_at--1084--7231Chr06:5019164..5019188 (25 bp)
GTCCCGGCGAGGTAGCAACGACTAC
LOC_Os06g09860
Os.8116.1.S1_at--683--2591Chr06:5019180..5019204 (25 bp)
AACGACTACTCGTCGTGAGACGGCC
LOC_Os06g09860
Os.8116.1.S1_at--233--891Chr06:5019256..5019280 (25 bp)
AGGCAAGCGAGGGTCAAAATTTTCT
LOC_Os06g09860
Os.8116.1.S1_at--883--10311Chr06:5019276..5019300 (25 bp)
TTTCTCTTGTTTATCTATGTCAGCA
LOC_Os06g09860
Os.8116.1.S1_at--1077--5531Chr06:5019326..5019350 (25 bp)
GAAACTGTTTCTGCGTCCAGTATCG
LOC_Os06g09860
Os.8116.1.S1_at--448--6911Chr06:5019345..5019369 (25 bp)
GTATCGCACACACAGGAGCATTTCA
LOC_Os06g09860
Target Sequence 
TATACCTCCAGAACGCCAAGGGCGGCACGGACCTCGTCATGTGGGCGACGTCGGCGATCGCCGACGGCTACGAGCGGGAC
CTGTTCGACAAGGCCATCACGTCGGCGTGGAAGTTCGCGCTGCCGGACATGGCGCGGCTCATGCGCGTCGCCGTCGACTG
CGTCGAGACGGACGCCGACAAGCGGCCGGACATGAAGGTCGCCGCGGCGAGGGTGGAGGAGGTGNTCGCCGCGGCCATGG
CGACGGTGAGGGAGAGGCATCAAGCGGCCGGTGGCGAGAGCAGCAGAAGCTCGTCGCACGCCCAGTACGTGCGAGACGGG
TCCATGCAGCGGATCACAAGCGTCGGCGAGCGGTCGTCCCGGCGAGGTAGCAACGACTACTCGTCGTGAGACGGCCGGCG
GCGAGGTGGCTGGCCGGAGACTTTTTTTTTTTTTTGGTAAGTCGGCGAGGCAAGCGAGGGTCAAAATTTTCTCTTGTTTA
TCTATGTCAGCAATAGCTAAAGCCTTCAGGAANAAAAGAAACTGTTTCTGCGTCCAGTATCGCACACACAGGAGCATTTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis