Browse Element(s) Details


OsAffx.15338.1.S1_at

Description tigr:9634.m00948
TID=OsAffx.15338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0981011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09770NANA6+4973619..4976602hypothetical protein
LOC_Os06g09780NANA6+4978156..4979997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g09790OsAffx.15337.1.S1_at11/116+4990220..4991150AP2 domain containing protein, expressed
LOC_Os06g09800OsAffx.27539.1.S1_at11/116+4994259..4994861hypothetical protein
LOC_Os06g09810OsAffx.15338.1.S1_at11/116+4997065..4997688AP2 domain containing protein
LOC_Os06g09820OsAffx.15339.1.S1_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09820OsAffx.15339.1.S1_s_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09830Os.9561.1.S1_at11/116+5004425..5007057Protein of unknown function containing protein, expressed
LOC_Os06g09840Os.16603.1.S1_at11/116+5007202..5009735expressed protein
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15338.1.S1_at--440--4691Chr06:4997191..4997215 (25 bp)
GCGGAGATCCGTCTGCCCAGCAGCT
LOC_Os06g09810
OsAffx.15338.1.S1_at--1142--8391Chr06:4997424..4997448 (25 bp)
GGCGCCGGCCGACATTGTTGTTCCA
LOC_Os06g09810
OsAffx.15338.1.S1_at--266--3931Chr06:4997429..4997453 (25 bp)
CGGCCGACATTGTTGTTCCAGCTCA
LOC_Os06g09810
OsAffx.15338.1.S1_at--998--10771Chr06:4997441..4997465 (25 bp)
TTGTTCCAGCTCAGGTCGCGACCGA
LOC_Os06g09810
OsAffx.15338.1.S1_at--1157--1571Chr06:4997448..4997472 (25 bp)
AGCTCAGGTCGCGACCGAGGAGTCC
LOC_Os06g09810
OsAffx.15338.1.S1_at--558--8451Chr06:4997516..4997540 (25 bp)
TGGCGGCTGGGAGCTTGGACTGGTC
LOC_Os06g09810
OsAffx.15338.1.S1_at--755--8531Chr06:4997531..4997555 (25 bp)
TGGACTGGTCGCAGTTCATGGCAAA
LOC_Os06g09810
OsAffx.15338.1.S1_at--947--1211Chr06:4997543..4997567 (25 bp)
AGTTCATGGCAAACCCACCACCTAT
LOC_Os06g09810
OsAffx.15338.1.S1_at--674--851Chr06:4997548..4997572 (25 bp)
ATGGCAAACCCACCACCTATGTACT
LOC_Os06g09810
OsAffx.15338.1.S1_at--1085--1751Chr06:4997574..4997598 (25 bp)
ACCGACGGCGACAGCCGGAAGCCAG
LOC_Os06g09810
OsAffx.15338.1.S1_at--1100--8951Chr06:4997612..4997636 (25 bp)
TGACAGCACCGGCAGCAGAAGCCGA
LOC_Os06g09810
Target Sequence 
GCGGAGATCCGTCTGCCCAGCAGCTGCGAGAGGATATGGCTGGGATCCTACGACACGCCGGAGAAGGCGGCGCGGGCGTT
CGACGCCGCGTTCATCTGCCTCCGCGGCGTCCAAGCCATTGCCGGGCTCAACTTCCCCGAGTCCCCGCCGCCGCCTACCG
CCGCCCGCACCGGCGATCTGCGTGAGGTGTATGCCTTCGCTGTGTCGCATGCCAACCGGCCGTCGGCCGAAGCGGCGCCG
GCCGACATTGTTGTTCCAGCTCAGGTCGCGACCGAGGAGTCCGACGGCGTGGTGAGGGGAAATGCGGCGCCGCCGCCGGT
GCAGGTGGCGGCTGGGAGCTTGGACTGGTCGCAGTTCATGGCAAACCCACCACCTATGTACTCACCGACGGCGACAGCCG
GAAGCCAGGCGATGTGGCCGGTGACAGCACCGGCAGCAGAAGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis