Browse Element(s) Details


Os.9168.1.S1_at

Description gb:AK064781.1
DB_XREF= gi:32974799
TID=Os.9168.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B09, full insert sequence.
FL= gb:AK064781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0985011/1125.3 kDa vesicle transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09790OsAffx.15337.1.S1_at11/116+4990220..4991150AP2 domain containing protein, expressed
LOC_Os06g09800OsAffx.27539.1.S1_at11/116+4994259..4994861hypothetical protein
LOC_Os06g09810OsAffx.15338.1.S1_at11/116+4997065..4997688AP2 domain containing protein
LOC_Os06g09820OsAffx.15339.1.S1_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09820OsAffx.15339.1.S1_s_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09830Os.9561.1.S1_at11/116+5004425..5007057Protein of unknown function containing protein, expressed
LOC_Os06g09840Os.16603.1.S1_at11/116+5007202..5009735expressed protein
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9168.1.S1_at--798--10091Chr06:5011778..5011802 (25 bp)
TATGGTAACTGCACTAAACTAAGGA
LOC_Os06g09850
Os.9168.1.S1_at--931--3891Chr06:5011751..5011775 (25 bp)
CTGGGCCTGCATTACCACACTGGTG
LOC_Os06g09850
Os.9168.1.S1_at--341--1351Chr06:5011680..5011704 (25 bp)
AGAGATGCTTTGGTGACTTGTATCC
LOC_Os06g09850
Os.9168.1.S1_at--432--2671Chr06:5011640..5011664 (25 bp)
AAGCGACTACTTCAGCTGCCTTTCA
LOC_Os06g09850
Os.9168.1.S1_at--712--3791Chr06:5011610..5011634 (25 bp)
CTCCCGACAAGCTATTCAAGCCAAT
LOC_Os06g09850
Os.9168.1.S1_at--144--10631Chr06:5011586..5011610 (25 bp)
TTCGTTGTAGCATACAGTAGACCTT
LOC_Os06g09850
Os.9168.1.S1_at--17--5811Chr06:5011567..5011591 (25 bp)
GACCTTATAACGGAACTCGGACTTG
LOC_Os06g09850
Os.9168.1.S1_at--160--3791Chr06:5011552..5011576 (25 bp)
CTCGGACTTGATTTTGTGAACCCTT
LOC_Os06g09850
Os.9168.1.S1_at--371--10231Chr06:5011540..5011564 (25 bp)
TTTGTGAACCCTTGGAACCGTATAT
LOC_Os06g09850
Os.9168.1.S1_at--912--8171Chr06:5011527..5011551 (25 bp)
GGAACCGTATATACAAGAGCTCTGT
LOC_Os06g09850
Os.9168.1.S1_at--17--471Chr06:5011414..5011438 (25 bp)
ATCTCTGCTGCATGTGACTCATCAT
LOC_Os06g09850
Target Sequence 
TATGGTAACTGCACTAAACTAAGGAAGCTGGGCCTGCATTACCACACTGGTGCAAGAAAAACCGAAAATTTAGGTAGATT
CTGGATCAAGAGATATCAAGAGATGCTTTGGTGACTTGTATCCCGTATCTGCCCATTCAAGCGACTACTTCAGCTGCCTT
TCACCCTCCTCCCGACAAGCTATTCAAGCCAATTCGTTGTAGCATACAGTAGACCTTATAACGGAACTCGGACTTGATTT
TGTGAACCCTTGGAACCGTATATACAAGAGCTCTGTAGAGTTGAATTTTTTTATATTGGGATGATATTGCATTTTATTTT
GCAAACTCATGTAAGAATTCAGGCTGAATATCCTATATTACAATATCTCTGCTGCATGTGACTCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis