Browse Element(s) Details


Os.8453.1.S1_a_at

Description gb:AK066664.1
DB_XREF= gi:32976682
TID=Os.8453.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072I01, full insert sequence.
FL= gb:AK099940.1 gb:AK066664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0989011/11Smr domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed
LOC_Os06g09870Os.54653.1.S1_at11/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09870Os.51848.1.S1_x_at1/116+5022094..5023200transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g09880NANA6+5028396..5034332pentatricopeptide, putative, expressed
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein
LOC_Os06g09910Os.48661.1.S1_at11/116+5053304..5055835Phosphopantothenoylcysteine decarboxylase, putative, expressed
LOC_Os06g09920NANA6+5056623..5057036hypothetical protein
LOC_Os06g09930Os.39747.1.S1_at11/116+5059665..5063953Identical to a putative G-protein-coupled receptor from , putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8453.1.S1_a_at--1154--411Chr06:5035595..5035619 (25 bp)
ATCTTCGCAACGAGGGAGCGACCGT
LOC_Os06g09890
Os.8453.1.S1_a_at--21--7191Chr06:5035572..5035596 (25 bp)
GTCTGATCGATCTACATGGTCTCCA
LOC_Os06g09890
Os.8453.1.S1_a_at--810--811Chr06:5035557..5035581 (25 bp)
ATGGTCTCCATGTGAACGAAGCAAT
LOC_Os06g09890
Os.8453.1.S1_a_at--1141--9771Chr06:5035523..5035547 (25 bp)
TAAGGTCGAGCTCGGTACTCTTAAG
LOC_Os06g09890
Os.8453.1.S1_a_at--362--9911Chr06:5035508..5035532 (25 bp)
TACTCTTAAGAGCACCGCGAGGGCT
LOC_Os06g09890
Os.8453.1.S1_a_at--922--7451Chr06:5035455..5035479 (25 bp)
GTGTCGGGACAGGTCATCACACCAA
LOC_Os06g09890
Os.8453.1.S1_a_at--1052--7811Chr06:5035444..5035468 (25 bp)
GGTCATCACACCAAGGGTTCTCGCA
LOC_Os06g09890
Os.8453.1.S1_a_at--627--931Chr06:5035359..5035383 (25 bp)
AGGCACAACCTGGTTTGCTCCGTGT
LOC_Os06g09890
Os.8453.1.S1_a_at--517--9091Chr06:5035344..5035368 (25 bp)
TGCTCCGTGTTGTGGTGTTCTAACA
LOC_Os06g09890
Os.8453.1.S1_a_at--303--2511Chr06:5035323..5035347 (25 bp)
AACATCTCTTAGGTCAGCAGCACGA
LOC_Os06g09890
Os.8453.1.S1_a_at--1108--2951Chr06:5035236..5035260 (25 bp)
AATGGCCGCTGTTGCAGCACTGTAA
LOC_Os06g09890
Target Sequence 
ATCTTCGCAACGAGGGAGCGACCGTCTGATCGATCTACATGGTCTCCATGTGAACGAAGCAATCCATATACTTAAGGTCG
AGCTCGGTACTCTTAAGAGCACCGCGAGGGCTACAGGTGAGAGGATGCAAGTCATGATATGTGTCGGGACAGGTCATCAC
ACCAAGGGTTCTCGCACCGCCAGGCTGCCCATCGCCGTCGAGCAGTTTCTTNTGGAGGAAGGCCTCCACTACACGCAGGC
ACAACCTGGTTTGCTCCGTGTTGTGGTGTTCTAACATCTCTTAGGTCAGCAGCACGAAGAAAAAAGAAGCAAAACAAAAA
AAGGAGAAAGAGATGTAGGGAAAAGAAAAACCTAAAAAAAATGGCCGCTGTTGCAGCACTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8453.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis