Browse Element(s) Details


Os.48782.1.S1_at

Description gb:AY177700.1
DB_XREF= gi:30313684
TID=Os.48782.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48782 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS33 mRNA, complete cds.
PROD=transcription factor MADS33
FL= gb:AY177700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1052011/11Agamous-like MADS box protein AGL12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10460OsAffx.31684.1.S1_at10/1112+5542292..5544299NB-ARC domain containing protein
LOC_Os12g10470OsAffx.24453.2.S1_at11/1112+5546276..5553783hypothetical protein
LOC_Os12g10480NANA12+5554889..5556161hypothetical protein
LOC_Os12g10490NANA12+5557123..5558779hypothetical protein
LOC_Os12g10500NANA12+5559581..5563927retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10510Os.53196.1.S1_at10/1112+5567824..5572417expressed protein
LOC_Os12g10520Os.48782.1.S1_at11/1112+5568630..5572009Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os12g10530NANA12+5576941..5577543hypothetical protein
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009933biological_processmeristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48782.1.S1_at--8--1851Chr12:5571959..5571983 (25 bp)
ACGAATAGAGAACCCTGTCCACAGA
LOC_Os12g10520
Os.48782.1.S1_at--17--3891Chr12:5571945..5571969 (25 bp)
CTGTCCACAGACAGGTAACCTTCTG
LOC_Os12g10520
Os.48782.1.S1_at--687--991Chr12:5571933..5571957 (25 bp)
AGGTAACCTTCTGTAAGCGCCGTGG
LOC_Os12g10520
Os.48782.1.S1_at--901--2951Chr12:5571895..5571919 (25 bp)
AAGGCCAGGGAACTATCAGTGCTTT
LOC_Os12g10520
Os.48782.1.S1_at--264--1131Chr12:5571878..5571902 (25 bp)
AGTGCTTTGTGATGCTGATGTAGGT
LOC_Os12g10520
Os.48782.1.S1_at--727--6791Chr12:5571853..5571877 (25 bp)
GTTATCATATTCTCCTCTCAGGGAA
LOC_Os12g10520
Os.48782.1.S1_at--150--7631Chr12:5571833..5571857 (25 bp)
GGGAAAACTCCATGAATTAGCTACT
LOC_Os12g10520
Os.48782.1.S1_at--1040--5551Chr12:5571697..5571721 (25 bp)
GAAAGGTACCAGAGCAATGTAGCAG
LOC_Os12g10520
Os.48782.1.S1_at--892--831Chr12:5571664..5571688 (25 bp)
ATGGAACCAGGAGCTCTACAAAGAC
LOC_Os12g10520
Os.48782.1.S1_at--1021--1011Chr12:5570554..5570578 (25 bp)
AGGTCTTGAACTATGGATTTACCAA
LOC_Os12g10520
Os.48782.1.S1_at--627--3172Chr12:5568654..5568678 (25 bp)
CAATGACCTACGGAAATCGCTTCTT
LOC_Os12g10520
Target Sequence 
ACGAATAGAGAACCCTGTCCACAGACAGGTAACCTTCTGTAAGCGCCGTGGGGGGCTCCTCAAGAAGGCCAGGGAACTAT
CAGTGCTTTGTGATGCTGATGTAGGTGTTATCATATTCTCCTCTCAGGGAAAACTCCATGAATTAGCTACTAATGGAAAT
ATGCATAACTTGGTTGAAAGGTACCAGAGCAATGTAGCAGGTGGTCAAATGGAACCAGGAGCTCTACAAAGACAGCAGGT
AGCAGAACAAGGGATTTTCTTGTTAAGGGAAGAAATAGATCTACTACAGAGGGGTCTTANGTCTACATATGGAGGGGGNG
CNNGGGAAATGACACTNGATAAATTNGCNTGCACTAGAGAAAGGTCTTGAACTATGGATTTACCAAATACGCACNNCAAA
GATGCAGATGATNGCAACAAGAGATTCAATTTCTTAGAAACAAGGAAGGCATACTAAAAGAAGCAAATGAAATGCTTCAA
GAGAAGGTGAAAGAACAGCANAAGCTATACATGTCTTTGTNGGATCTCCATAGTCAACAACCNACACAACCAATGACCTA
CGGAAATCGCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis