Browse Element(s) Details


Os.53196.1.S1_at

Description gb:AK071313.1
DB_XREF= gi:32981336
TID=Os.53196.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084A11, full insert sequence.
FL= gb:AK071313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1051010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10460OsAffx.31684.1.S1_at10/1112+5542292..5544299NB-ARC domain containing protein
LOC_Os12g10470OsAffx.24453.2.S1_at11/1112+5546276..5553783hypothetical protein
LOC_Os12g10480NANA12+5554889..5556161hypothetical protein
LOC_Os12g10490NANA12+5557123..5558779hypothetical protein
LOC_Os12g10500NANA12+5559581..5563927retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10510Os.53196.1.S1_at10/1112+5567824..5572417expressed protein
LOC_Os12g10520Os.48782.1.S1_at11/1112+5568630..5572009Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os12g10530NANA12+5576941..5577543hypothetical protein
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53196.1.S1_at--105--7371NONE
GTGACTGTGATATAACCTTTGGCCT
NONE
Os.53196.1.S1_at--134--1751Chr12:5572034..5572058 (25 bp)
ACCTTTGGCCTGGACTAGACTTGAA
LOC_Os12g10510
Os.53196.1.S1_at--371--8991Chr12:5572055..5572079 (25 bp)
TGAAGCTACAGCTGTGGCACTAGTA
LOC_Os12g10510
Os.53196.1.S1_at--116--1271Chr12:5572086..5572110 (25 bp)
AGATATTGACCTTGTGTTCCTCTCA
LOC_Os12g10510
Os.53196.1.S1_at--964--7511Chr12:5572130..5572154 (25 bp)
GTGGATGGCCTGCTTTTATATACCA
LOC_Os12g10510
Os.53196.1.S1_at--932--10351Chr12:5572145..5572169 (25 bp)
TTATATACCAGTCCACCTTCAAGGG
LOC_Os12g10510
Os.53196.1.S1_at--58--5531Chr12:5572220..5572244 (25 bp)
GAAAAGCATCTTGCAGGTCACTGTA
LOC_Os12g10510
Os.53196.1.S1_at--294--1031Chr12:5572234..5572258 (25 bp)
AGGTCACTGTACATCTTTCTTCCTG
LOC_Os12g10510
Os.53196.1.S1_at--161--10311Chr12:5572249..5572273 (25 bp)
TTTCTTCCTGCTCATGTAGATTCTT
LOC_Os12g10510
Os.53196.1.S1_at--28--10011Chr12:5572339..5572363 (25 bp)
TAGCTGTTCCTCTAAGATCTTATGT
LOC_Os12g10510
Os.53196.1.S1_at--45--10591Chr12:5572377..5572401 (25 bp)
TTCTCCATTGTTCTTTCCCTTAAAG
LOC_Os12g10510
Target Sequence 
GTGACTGTGATATAACCTTTGGCCTGGACTAGACTTGAAGCTACAGCTGTGGCACTAGTAACAAGGAGATATTGACCTTG
TGTTCCTCTCAAATCGAAGTACACATGCAGGTGGATGGCCTGCTTTTATATACCAGTCCACCTTCAAGGGAATATGAGTA
TGACCTTTGGATAGCACTGATTGCTTTGTTGTAAGCCACTGAAAAGCATCTTGCAGGTCACTGTACATCTTTCTTCCTGC
TCATGTAGATTCTTATAAATATTGTCATATCTCTATATGATATACTTGTATAATTGCTGTTCGTTTGTTATGATTAATTT
AGCTGTTCCTCTAAGATCTTATGTCACATCTAATGACTTCTCCATTGTTCTTTCCCTTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis