Browse Element(s) Details


OsAffx.31684.1.S1_at

Description tigr:9640.m00983
TID=OsAffx.31684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1046010/11NB-ARC domain containing protein
LOC_Os12g103401/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10420OsAffx.18200.1.S1_at1/1112+5521618..5523731retrotransposon protein, putative, unclassified
LOC_Os12g10430OsAffx.22699.1.S1_x_at1/1112+5523867..5528355retrotransposon protein, putative, unclassified
LOC_Os12g10440OsAffx.29073.1.S1_x_at8/1112+5529193..5535753hypothetical protein
LOC_Os12g10440Os.46610.1.A1_x_at2/1112+5529193..5535753hypothetical protein
LOC_Os12g10450OsAffx.31683.1.S1_at11/1112+5537961..5538999hypothetical protein
LOC_Os12g10460OsAffx.31684.1.S1_at10/1112+5542292..5544299NB-ARC domain containing protein
LOC_Os12g10470OsAffx.24453.2.S1_at11/1112+5546276..5553783hypothetical protein
LOC_Os12g10480NANA12+5554889..5556161hypothetical protein
LOC_Os12g10490NANA12+5557123..5558779hypothetical protein
LOC_Os12g10500NANA12+5559581..5563927retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10510Os.53196.1.S1_at10/1112+5567824..5572417expressed protein
LOC_Os12g10520Os.48782.1.S1_at11/1112+5568630..5572009Agamous-like MADS box protein AGL12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31684.1.S1_at--361--5171Chr12:5543384..5543408 (25 bp)
GCAAGGACACTTGAGACCATTAAAT
LOC_Os12g10460
OsAffx.31684.1.S1_at--31--8171Chr12:5543310..5543334 (25 bp)
GGAAAAACTATTTGCCTCTTTGAGA
LOC_Os12g10460
OsAffx.31684.1.S1_at--421--10011Chr12:5543133..5543251 (25 bp)
TAGCATCAGCTATCCCCAAAAATTT
LOC_Os12g10460
OsAffx.31684.1.S1_at--345--2831NONE
AAGTTCTGAAAGTTTGCTTCCGATA
NONE
OsAffx.31684.1.S1_at--305--471Chr12:5542813..5542833 (21 bp)
ATCTCCCAGACAACAGGTGAATGTG
LOC_Os12g10460
OsAffx.31684.1.S1_at--515--5251Chr12:5542613..5542637 (25 bp)
GAATCTTTGACGCTAATGGCTCCAA
LOC_Os12g10460
OsAffx.31684.1.S1_at--338--9831Chr12:5542583..5542607 (25 bp)
TAAAAAGAACAGTACGTCACCTATC
LOC_Os12g10460
OsAffx.31684.1.S1_at--36--4031Chr12:5542569..5542593 (25 bp)
CGTCACCTATCTGTTGTTGGTATTA
LOC_Os12g10460
OsAffx.31684.1.S1_at--366--291Chr12:5542544..5542568 (25 bp)
ATAGTTTTCCAGCTGACATCATTAA
LOC_Os12g10460
OsAffx.31684.1.S1_at--1096--2251Chr12:5542501..5542525 (25 bp)
AAATCTCCGCACCATTGTCTTTGAA
LOC_Os12g10460
OsAffx.31684.1.S1_at--590--7152Chr12:5476003..5476023 (21 bp)
GTCTTTGAAGATTGCCATGATATCC
LOC_Os12g10340
Target Sequence 
GCAAGGACACTTGAGACCATTAAATATCTTCTCATTCTAGATGATGTCTGGGAAGATAAGGAAATCTCTGAGTGGGAAAA
ACTATTTGCCTCTTTGAGAACAGGAGTGTATGGGAGGAAGATTTTGTTGACAACCCGAATGCAATCAGTGGCAGATTTAG
CATCAGCTATCCCCAAAAATTTGAAGAATTACAAGAAGCTGGAGAAAAAATTGCAAGAAACTAAGAGGCTGGGTTATTTT
GATGGAGGTATGGAAGATATCATGAAAGTTCTGAAAGTTTGCTTCCGATATTGTAGCATTTTCCCACAAGATCATGAATT
CAAAAAAGAAGAATTGGTACAGATGTGGATAGCTTCAGGATTGATCTCCCAGACAACAGGTGAATGTGCAAGAATCTTTG
ACGCTAATGGCTCCAAGAAAGTAAAAAGAACAGTACGTCACCTATCTGTTGTTGGTATTAATAGTTTTCCAGCTGACATC
ATTAAAAGTTTCTCCCGGTTCAAAAATCTCCGCACCATTGTCTTTGAAGATTGCCATGATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis