Browse Element(s) Details


OsAffx.31683.1.S1_at

Description tigr:9640.m00982
TID=OsAffx.31683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1045011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10410Os.53446.1.S1_at11/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10410OsAffx.25541.1.S1_at1/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10420OsAffx.18200.1.S1_at1/1112+5521618..5523731retrotransposon protein, putative, unclassified
LOC_Os12g10430OsAffx.22699.1.S1_x_at1/1112+5523867..5528355retrotransposon protein, putative, unclassified
LOC_Os12g10440OsAffx.29073.1.S1_x_at8/1112+5529193..5535753hypothetical protein
LOC_Os12g10440Os.46610.1.A1_x_at2/1112+5529193..5535753hypothetical protein
LOC_Os12g10450OsAffx.31683.1.S1_at11/1112+5537961..5538999hypothetical protein
LOC_Os12g10460OsAffx.31684.1.S1_at10/1112+5542292..5544299NB-ARC domain containing protein
LOC_Os12g10470OsAffx.24453.2.S1_at11/1112+5546276..5553783hypothetical protein
LOC_Os12g10480NANA12+5554889..5556161hypothetical protein
LOC_Os12g10490NANA12+5557123..5558779hypothetical protein
LOC_Os12g10500NANA12+5559581..5563927retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31683.1.S1_at--1061--5071Chr12:5538334..5538358 (25 bp)
GCACCAGCCGAGCAGCAAATCACAG
LOC_Os12g10450
OsAffx.31683.1.S1_at--382--8051Chr12:5538375..5538399 (25 bp)
GGAGAAACGGCCACGCGTGTGCTCT
LOC_Os12g10450
OsAffx.31683.1.S1_at--303--7471Chr12:5538391..5538415 (25 bp)
GTGTGCTCTGCTTATTCTCCTCTGC
LOC_Os12g10450
OsAffx.31683.1.S1_at--1125--331Chr12:5538425..5538449 (25 bp)
ATAACTCAATTTGCTTCCTTCTCAA
LOC_Os12g10450
OsAffx.31683.1.S1_at--767--2471Chr12:5538448..5538469 (22 bp)
AACACGTCATGAGCTGGGCCATCAG
LOC_Os12g10450
OsAffx.31683.1.S1_at--635--972Chr12:5538566..5538590 (25 bp)
AGGAGAAGCTTCTCGCGAAGCTGGT
LOC_Os12g10450
OsAffx.31683.1.S1_at--579--3971Chr12:5538629..5538653 (25 bp)
CGGTGAACTCCATGGCTCCACGCAA
LOC_Os12g10450
OsAffx.31683.1.S1_at--1133--1831Chr12:5538648..5538672 (25 bp)
ACGCAACCAGTTTTGCTGCTGCCTT
LOC_Os12g10450
OsAffx.31683.1.S1_at--732--4771Chr12:5538662..5538686 (25 bp)
GCTGCTGCCTTTTGCAATCATTCTA
LOC_Os12g10450
OsAffx.31683.1.S1_at--954--411Chr12:5538678..5538702 (25 bp)
ATCATTCTATACCTTGCCAAATCCC
LOC_Os12g10450
OsAffx.31683.1.S1_at--475--8331Chr12:5538920..5538944 (25 bp)
GGCTGCCGCAACACGTACGCAAGGG
LOC_Os12g10450
Target Sequence 
GCACCAGCCGAGCAGCAAATCACAGCTGCAACGGCAGCGGAGGAGAAACGGCCACGCGTGTGCTCTGCTTATTCTCCTCT
GCTCAGAGTCAATAACTCAATTTGCTTCCTTCTCAACACGTCATGAGCTGGGCCATCAGAAACACGGCAGAGGAGAAGAG
GAGAAGCTTCTCGCGAAGCTGGTGGCGCTGGTGTCCGCGGCGGCGGGAGATGCGGATGCGGCGGTGAACTCCATGGCTCC
ACGCAACCAGTTTTGCTGCTGCCTTTTGCAATCATTCTATACCTTGCCAAATCCCCTTCCCCGGAGCAGTCGTCGCGGTG
CCAGCCTTCGCCGCCGCGACGAGGAAGACGACAGCGACGATGACGACAGGAAGGAGGAGGCCGTGGAGCTCGAGATGCTG
CGCAGCGAGCGGCGCGCCGTGAGGCTGCCGAGGTCGCACTCGACGGGGCAATCGCTGGTTGCGTCGGCGGCCGCCGCCGC
CGAGTCCGGCGACCACAATCGGTTCACGCTGCGGCTGCCGCAACACGTACGCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis