Browse Element(s) Details


OsAffx.25541.1.S1_at

Description tigr:9631.m04319
TID=OsAffx.25541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4468011/11hypothetical protein
LOC_Os12g104101/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25541.1.S1_at--932--1512Chr03:25109515..25109539 (25 bp)
AGCAGCAACGGTGCCAGCTCCGAAT
LOC_Os03g44680
OsAffx.25541.1.S1_at--952--2571Chr03:25109509..25109533 (25 bp)
AACGGTGCCAGCTCCGAATCAATGT
LOC_Os03g44680
OsAffx.25541.1.S1_at--483--7791Chr03:25109506..25109530 (25 bp)
GGTGCCAGCTCCGAATCAATGTCGG
LOC_Os03g44680
OsAffx.25541.1.S1_at--128--4411Chr03:25109503..25109527 (25 bp)
GCCAGCTCCGAATCAATGTCGGCCT
LOC_Os03g44680
OsAffx.25541.1.S1_at--815--10591Chr03:25109430..25109454 (25 bp)
TTCTGATTTCCTCCGTCGCGCATCC
LOC_Os03g44680
OsAffx.25541.1.S1_at--533--5651Chr03:25109344..25109368 (25 bp)
GACAGGGCAAGGTGGCACTCGAGGT
LOC_Os03g44680
OsAffx.25541.1.S1_at--1066--1991Chr03:25109328..25109352 (25 bp)
ACTCGAGGTGGCTCAGCGACGGATC
LOC_Os03g44680
OsAffx.25541.1.S1_at--365--7971Chr03:25109308..25109332 (25 bp)
GGATCGACGACGGATCCGTCCTCGT
LOC_Os03g44680
OsAffx.25541.1.S1_at--177--9372Chr12:5510923..5511121 (25 bp)
TCGACGACGGATCCGTCCTCGTCTT
LOC_Os12g10410
OsAffx.25541.1.S1_at--948--1831Chr03:25109234..25109258 (25 bp)
ACGCAGTCCGGTGTCGAGCGGAGTA
LOC_Os03g44680
OsAffx.25541.1.S1_at--747--4772Chr02:31435717..31436050 (25 bp)
GCTGCGTGGAGTAGCGAGCTTCTCC
NONE
Target Sequence 
AGCAGCAACGGTGCCAGCTCCGAATCAATGTCGGCCTCGACCTCATGCTCGAGCTCCTCTGCCTCTCCGTCGCCTCCCTC
TCCCCTTCTGATTTCCTCCGTCGCGCATCCCTCCTCCTCGTCCGGCCGCCACGCCTCTCCTCCTCCAGCCGCCGCGGCGC
AGAATGGGGTGGACAGGGCAAGGTGGCACTCGAGGTGGCTCAGCGACGGATCGACGACGGATCCGTCCTCGTCTTCGTCG
CCTCTCCACCCCCCTGCCCTCTCTGCGACGAGGTCGGGGCGACGCAGTCCGGTGTCGAGCGGAGTAGGGGCTCCCCGGCG
GCTGCGTGGAGTAGCGAGCTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis