Browse Element(s) Details


Os.46241.2.S1_s_at

Description gb:AK103763.1
DB_XREF= gi:32988972
TID=Os.46241.2
CNT=129
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20618 DNAJ-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143G16, full insert sequence.
FL= gb:AK102263.1 gb:AK105028.2 gb:AK103763.1 gb:AK058555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4462011/11DnaJ protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46241.2.S1_s_at--821--10591Chr03:25083355..25083379 (25 bp)
TTGAGTGACCCGGAGAAACGTGAAA
LOC_Os03g44620
Os.46241.2.S1_s_at--879--5851Chr03:25083385..25083409 (25 bp)
GACCAATATGGTGAAGATGCCCTCA
LOC_Os03g44620
Os.46241.2.S1_s_at--882--6211Chr03:25083425..25083449 (25 bp)
GAGGCGGATCCCATGTTGATCCATT
LOC_Os03g44620
Os.46241.2.S1_s_at--374--6371Chr03:25083442..25083466 (25 bp)
GATCCATTTGACATCTTTTCATCAT
LOC_Os03g44620
Os.46241.2.S1_s_at--229--6371Chr03:25083640..25083664 (25 bp)
GATCCATCCGCTTAAGGTTTCTCTA
LOC_Os03g44620
Os.46241.2.S1_s_at--18--7851Chr03:25083680..25083704 (25 bp)
GGTACTTCAAAGAAGCTCTCTCTTT
LOC_Os03g44620
Os.46241.2.S1_s_at--822--2871Chr03:25083817..25083841 (25 bp)
AAGGGTTCCAAGTCTGGTGCTTCCA
LOC_Os03g44620
Os.46241.2.S1_s_at--327--7771Chr03:25083832..25083856 (25 bp)
GGTGCTTCCATGAGGTGCCCAGGTT
LOC_Os03g44620
Os.46241.2.S1_s_at--631--8971Chr03:25083872..25083896 (25 bp)
TGAAAATCACCATCCGCCAGCTGGG
LOC_Os03g44620
Os.46241.2.S1_s_at--1143--2991Chr03:25083961..25083985 (25 bp)
AATGAGAAGGATCGCTGCCCAGGCT
LOC_Os03g44620
Os.46241.2.S1_s_at--185--3871Chr03:25084082..25084188 (25 bp)
CTGATGAGGCGCCTGATACCGTTAC
LOC_Os03g44620
Target Sequence 
TTGAGTGACCCGGAGAAACGTGAAATCTATGACCAATATGGTGAAGATGCCCTCAAGGAAGGAATGGGTGGAGGCGGATC
CCATGTTGATCCATTTGACATCTTTTCATCATTCTTTGGACCTTCTTTTGGTGGTGGTGGCAGCAGCAGGGGCAGAAGGC
AAAGGAGGGGAGAGGATGTGATCCATCCGCTTAAGGTTTCTCTAGAAGATCTTTACAATGGTACTTCAAAGAAGCTCTCT
CTTTCCCGCAATGTCCTCTGCGCCAAGTGCAAGGGCAAGGGTTCCAAGTCTGGTGCTTCCATGAGGTGCCCAGGTTGCCA
GGGGTCTGGCATGAAAATCACCATCCGCCAGCTGGGGCCTTCCATGATACAGCAGATGCAGCAGCCTTGCAATGAGTGTA
AGGGGACTGGAGAGAGCATTAATGAGAAGGATCGCTGCCCAGGCTGCAAGGGCGAGAAGGTTATTCAGGAGAAGAAGGTT
CTGGAGGTTCACGTTGAGAAGGGGATGCAACACAATCAGAAGATCACTTTCCCTGGTGAAGCTGATGAGGCGCCTGATAC
CGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46241.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis