Browse Element(s) Details


Os.18246.1.S1_at

Description gb:AK109329.2
DB_XREF= gi:42821646
TID=Os.18246.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence.
FL= gb:AK109329.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4458011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18246.1.S1_at--1009--10671Chr03:25057218..25057242 (25 bp)
TTCCTTGCCTGATCAAGCGCAGAGA
LOC_Os03g44580
Os.18246.1.S1_at--696--1651Chr03:25057203..25057227 (25 bp)
AGCGCAGAGACTCGTGCTATCCAGA
LOC_Os03g44580
Os.18246.1.S1_at--1148--2011Chr03:25057173..25057197 (25 bp)
ACTACTTCCCGACATTGCTGGATAT
LOC_Os03g44580
Os.18246.1.S1_at--10--8571Chr03:25057155..25057179 (25 bp)
TGGATATGCAAGACCCCGAAGGCTG
LOC_Os03g44580
Os.18246.1.S1_at--679--4751Chr03:25057134..25057158 (25 bp)
GCTGCACCGGGTATACTCTGACAAG
LOC_Os03g44580
Os.18246.1.S1_at--748--7451Chr03:25057054..25057078 (25 bp)
GTGTCTGCAAGCCTGATCAAGGAGC
LOC_Os03g44580
Os.18246.1.S1_at--411--7631Chr03:25057015..25057039 (25 bp)
GGGACATACTCGTACATGTTCGCCC
LOC_Os03g44580
Os.18246.1.S1_at--638--4071Chr03:25056977..25057001 (25 bp)
CGAGTGCCTTGAGCCACTGATGGAG
LOC_Os03g44580
Os.18246.1.S1_at--389--71Chr03:25056952..25056976 (25 bp)
ATTGCAGACTCTGTCATCCTACGTG
LOC_Os03g44580
Os.18246.1.S1_at--764--551Chr03:25056937..25056961 (25 bp)
ATCCTACGTGACTAATCCAGCAACA
LOC_Os03g44580
Os.18246.1.S1_at--608--10111Chr03:25056859..25056883 (25 bp)
TATGTACTGTTGCTAAGGTGGTGTC
LOC_Os03g44580
Target Sequence 
TTCCTTGCCTGATCAAGCGCAGAGACTCGTGCTATCCAGAGGAGCACTACTTCCCGACATTGCTGGATATGCAAGACCCC
GAAGGCTGCACCGGGTATACTCTGACAAGGGTGAACTGGACGGATCAAGTCGAGGGCCANCCTCACACATACCGGCCTGG
GGAGGTGTCTGCAAGCCTGATCAAGGAGCTGAGGAAATCAAATGGGACATACTCGTACATGTTCGCCCGCAAGTTTGCTC
CCGAGTGCCTTGAGCCACTGATGGAGATTGCAGACTCTGTCATCCTACGTGACTAATCCAGCAACAACACCACATTTCAG
GGTGTCGGAATTTGTACACTGAGGTGAATGAGGTATGGATATGTACTGTTGCTAAGGTGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis