Browse Element(s) Details


OsAffx.20848.1.S1_at

Description gb:XM_354468.1
DB_XREF= gi:35191659
GEN=P0577B11.10
TID=OsAffx.20848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g445501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20848.1.S1_at--358--5392Chr08:3624916..3624940 (25 bp)
GAAGCAGCGGGACGACGGGCTGCTC
NONE
OsAffx.20848.1.S1_at--487--3791NONE
CTCGCCGTCGCAGGGTGAAAGCCGT
NONE
OsAffx.20848.1.S1_at--971--4911Chr08:3622005..3622029 (25 bp)
GCTTCGCTAAAGATGGGCCTTGTTG
NONE
OsAffx.20848.1.S1_at--376--10631Chr08:3622003..3622027 (25 bp)
TTCGCTAAAGATGGGCCTTGTTGGA
NONE
OsAffx.20848.1.S1_at--18--9831Chr08:3621998..3622022 (25 bp)
TAAAGATGGGCCTTGTTGGAGGGCC
NONE
OsAffx.20848.1.S1_at--227--8551Chr08:3621982..3622006 (25 bp)
TGGAGGGCCATACGGACGAAGATTG
NONE
OsAffx.20848.1.S1_at--356--1471Chr08:3618791..3618812 (22 bp)
AGAAGGTGGATCAGCTGGGCCCACA
NONE
OsAffx.20848.1.S1_at--1143--5311Chr08:3618790..3618812 (23 bp)
GAAGGTGGATCAGCTGGGCCCACAT
NONE
OsAffx.20848.1.S1_at--774--1051Chr08:3618788..3618812 (25 bp)
AGGTGGATCAGCTGGGCCCACATGT
NONE
OsAffx.20848.1.S1_at--756--7731Chr08:3618787..3618811 (25 bp)
GGTGGATCAGCTGGGCCCACATGTC
NONE
OsAffx.20848.1.S1_at--530--8572Chr08:3618785..3618809 (25 bp)
TGGATCAGCTGGGCCCACATGTCGG
NONE
Target Sequence 
GAAGCAGCGGGACGACGGGCTGCTCCCCTCGCGGGCGCCGCTGCTCGCCGTCGCAGGGTGAAAGCCGTGGCATGAAGCAC
ATGGGCTTCGCTAAAGATGGGCCTTGTTGGAGGGCCATACGGACGAAGATTGCGGGGCGAAAGCCTTGCTGCGAAGGGCA
CGGGTTTCGCCAAGAACCGGACCTCACTGGAAGAAGGTGGATCAGCTGGGCCCACATGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis