Browse Element(s) Details


Os.54360.1.S1_at

Description gb:AK103649.1
DB_XREF= gi:32988858
TID=Os.54360.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135D01, full insert sequence.
FL= gb:AK103649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4453011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54360.1.S1_at--770--2331Chr03:25017903..25017927 (25 bp)
AAAGATCCCACACTTTGAGCTTCCC
LOC_Os03g44530
Os.54360.1.S1_at--286--4211Chr03:25017880..25017904 (25 bp)
CCCCTGGTGATACAGATTCTGAAAC
LOC_Os03g44530
Os.54360.1.S1_at--420--1211Chr03:25017867..25017891 (25 bp)
AGATTCTGAAACTGACCCAGAGGAA
LOC_Os03g44530
Os.54360.1.S1_at--653--8931Chr03:25017855..25017879 (25 bp)
TGACCCAGAGGAAACCACTGACCTT
LOC_Os03g44530
Os.54360.1.S1_at--349--8151Chr03:25017846..25017870 (25 bp)
GGAAACCACTGACCTTGAAGGCTCA
LOC_Os03g44530
Os.54360.1.S1_at--549--2931Chr03:25017829..25017853 (25 bp)
AAGGCTCAGATACTGCAGTAGGTGC
LOC_Os03g44530
Os.54360.1.S1_at--636--5031Chr03:25017815..25017839 (25 bp)
GCAGTAGGTGCCACAGCAGATCATT
LOC_Os03g44530
Os.54360.1.S1_at--295--2151Chr03:25017803..25017827 (25 bp)
ACAGCAGATCATTGTGCTTCTGATG
LOC_Os03g44530
Os.54360.1.S1_at--50--4331Chr03:25017436..25017460 (25 bp)
CCATTTTGTTTCATCTTCTGCTGTT
LOC_Os03g44530
Os.54360.1.S1_at--1100--10591Chr03:25017421..25017445 (25 bp)
TTCTGCTGTTTGTTATGGCCATCTG
LOC_Os03g44530
Os.54360.1.S1_at--991--4731Chr03:25017417..25017441 (25 bp)
GCTGTTTGTTATGGCCATCTGTAAT
LOC_Os03g44530
Target Sequence 
AAAGATCCCACACTTTGAGCTTCCCCCTGGTGATACAGATTCTGAAACTGACCCAGAGGAAACCACTGACCTTGAAGGCT
CAGATACTGCAGTAGGTGCCACAGCAGATCATTGTGCTTCTGATGAACAAGATGGGGAAATCAGTCAAGCTGATCCAAAC
ATTAGTCATGTACTAAGTGACCTTGAATCTTTCGACCTGGCCAGTGAAGTGTCCAAGAACTCTACAAAGAAGAAGAAAGA
GGCATCCTATAAGCATCACAAGAAACCCCAGAGGAAGAAGGATCGTTCATGGAGGGTTGGAAATGATGGCGCTGATGGAT
CTGCTGTTGTTCGGGTGTTCCAGAAACCTGCCGTCAATTTTGCTACCGTTACAGGTTAATGTTTTTTTGCGGCACTCTGT
GCGACTTCATTCTCTTTTTTAGCTTACGGTAATTGAAGATGTCGTTGAAAGTCAAACTACATTTTATCCATTTTGTTTCA
TCTTCTGCTGTTTGTTATGGCCATCTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis