Browse Element(s) Details


Os.53631.1.S1_at

Description gb:AK073665.1
DB_XREF= gi:32983688
TID=Os.53631.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051B07, full insert sequence.
FL= gb:AK073665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4452011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53631.1.S1_at--1045--4151Chr03:25016050..25016074 (25 bp)
CGCCGCGCTCCACAAGTGCATGGAG
LOC_Os03g44520
Os.53631.1.S1_at--579--9211Chr03:25016058..25016082 (25 bp)
TCCACAAGTGCATGGAGGCCCACGC
LOC_Os03g44520
Os.53631.1.S1_at--876--8171Chr03:25016257..25016281 (25 bp)
GGAAGCGGTGGTCCCGGAGAAGCAA
LOC_Os03g44520
Os.53631.1.S1_at--462--5971Chr03:25016273..25016297 (25 bp)
GAGAAGCAAGATGTCGCGGCCTGAT
LOC_Os03g44520
Os.53631.1.S1_at--321--1311Chr03:25016281..25016305 (25 bp)
AGATGTCGCGGCCTGATTGGTCAAA
LOC_Os03g44520
Os.53631.1.S1_at--149--9351Chr03:25016286..25016310 (25 bp)
TCGCGGCCTGATTGGTCAAAACGGT
LOC_Os03g44520
Os.53631.1.S1_at--863--10531Chr03:25016357..25016381 (25 bp)
TTCAGATTGTGAATTCTTTTCTCTT
LOC_Os03g44520
Os.53631.1.S1_at--990--811Chr03:25016438..25016462 (25 bp)
ATGGATCTCTCCAAGAAAATGTCAA
LOC_Os03g44520
Os.53631.1.S1_at--679--10331Chr03:25016464..25016488 (25 bp)
TTCATTTTTGGGTGGAAACTATACA
LOC_Os03g44520
Os.53631.1.S1_at--998--7511Chr03:25016475..25016499 (25 bp)
GTGGAAACTATACACGAGTTCTGAA
LOC_Os03g44520
Os.53631.1.S1_at--933--451Chr03:25016510..25016534 (25 bp)
ATCTCATGCTCTAATAATGTGATGT
LOC_Os03g44520
Target Sequence 
CGCCGCGCTCCACAAGTGCATGGAGGCCCACGCCGAGTACTACCACCCCATCCTCAGCGCCGAGCGCGCCATGGCCGCCG
ACCTCGAGGCCGCCAAGGCAGACCAGGCCGCCGAGGCCTCCTCCGACGCCGCCGCCTCCTCCTCGCAGCAGCAGCAGCCG
CCGCCAACGGAGGAAGAAGCTGCCGGCGAGAAGAAGCAGGCGGAGGAGGAAGCGGTGGTCCCGGAGAAGCAAGATGTCGC
GGCCTGATTGGTCAAAACGGTGGGGATCTTGAGAAGAAATTTTTTTTGAGGGATCGATCTGAGGNGTTTCAGATTGTGAA
TTCTTTTCTCTTTTTTTTTCAAGGATTAATTAGTTAAACTTTGATCCNTGAGACGGATGGAGAGGGGGATGGATCTCTCC
AAGAAAATGTCAAATTCATTTTTGGGTGGAAACTATACACGAGTTCTGAATTANANNNANATCTCATGCTCTAATAATGT
GATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis