Browse Element(s) Details


Os.54660.1.S1_at

Description gb:AK106398.1
DB_XREF= gi:32991607
TID=Os.54660.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F12, full insert sequence.
FL= gb:AK106398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4454011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54660.1.S1_at--229--7971Chr03:25023766..25023790 (25 bp)
GGATCTCCAGGCGTGCCCAGAGCTG
LOC_Os03g44540
Os.54660.1.S1_at--346--1371Chr03:25023748..25023772 (25 bp)
AGAGCTGCTGCTGATCGATCACCAT
LOC_Os03g44540
Os.54660.1.S1_at--1149--1551Chr03:25023722..25023746 (25 bp)
AGCTTTGGCTGCCTGTAGGCAAATC
LOC_Os03g44540
Os.54660.1.S1_at--172--131Chr03:25023697..25023721 (25 bp)
ATTCTTGGCTCTTTACTTGCATTGG
LOC_Os03g44540
Os.54660.1.S1_at--415--9671Chr03:25023648..25023672 (25 bp)
TCACCTACCAAAACTGTCCCTGAAA
LOC_Os03g44540
Os.54660.1.S1_at--343--7251Chr03:25023633..25023657 (25 bp)
GTCCCTGAAACTTCTCTAGTGCTGG
LOC_Os03g44540
Os.54660.1.S1_at--375--6211Chr03:25023575..25023599 (25 bp)
GAGGCTTACCCATATGCCTGTAAAT
LOC_Os03g44540
Os.54660.1.S1_at--347--1951Chr03:25023449..25023473 (25 bp)
ACTGGAGTCGTTTGAAGCTTTGCAA
LOC_Os03g44540
Os.54660.1.S1_at--102--4891Chr03:25023433..25023457 (25 bp)
GCTTTGCAACAGCTGTGAGTGAAAC
LOC_Os03g44540
Os.54660.1.S1_at--345--6111Chr03:25023417..25023441 (25 bp)
GAGTGAAACTATGTGCTTGCTTGCT
LOC_Os03g44540
Os.54660.1.S1_at--370--1111Chr03:25023336..25023360 (25 bp)
AGTGAGATACTGTGACTGTCGATAT
LOC_Os03g44540
Target Sequence 
GGATCTCCAGGCGTGCCCAGAGCTGCTGCTGATCGATCACCATCAGCTTTGGCTGCCTGTAGGCAAATCATTCTTGGCTC
TTTACTTGCATTGGNGTTCTTGCAAGCAACTCTCCTCGTCACCTACCAAAACTGTCCCTGAAACTTCTCTAGTGCTGGGG
TCTCGATCAGGGATGATGATGTGATGGAGGAGAGGCTTACCCATATGCCTGTAAATTATGGTTAGTGTTCTGATTAAGCA
ACTAGTAGTACTTGGTAATNTACTGGCTATGAATTAGTAGTATGGACTCTGNNGTGTCAGNNTGCTCTTTGTCTGAATAA
ACTGGAGTCGTTTGAAGCTTTGCAACAGCTGTGAGTGAAACTATGTGCTTGCTTGCTTGCTTGTTGTTGGAGTGATTAAG
CTGGAGTTTTGTCTGGTTTGGGTGTGTGAGACCAGTGAGATACTGTGACTGTCGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis