Browse Element(s) Details


OsAffx.31294.1.S1_x_at

Description tigr:9639.m03092
TID=OsAffx.31294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3433011/11hypothetical protein
LOC_Os03g240909/11hypothetical protein
LOC_Os03g445402/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31294.1.S1_x_at--55--972Chr02:7264590..7264614 (23 bp)
AGGAGGCGGCAGACAACGGCGGCCC
NONE
OsAffx.31294.1.S1_x_at--74--9313Chr03:13655204..13655228 (25 bp)
TCCCCTTCTTTTCATGCTGATCTTG
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--822--3654Chr03:13655208..13655231 (24 bp)
CTTCTTTTCATGCTGATCTTGGTGG
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--897--3614Chr03:13655620..13655641 (22 bp)
CTTGGTGGTTGGACGGTTAGCATCT
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--368--10672Chr03:13655641..13655665 (25 bp)
TTCCTCCTCAAGCTGAGATTTGGGA
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--1145--7773Chr03:13655683..13655707 (25 bp)
GGTCCCGGATGCGACGACAGTGGGA
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--207--5653Chr03:13655698..13655722 (25 bp)
GACAGTGGGAAGTCGAACCCTGTGC
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--1079--1173Chr03:13655811..13655835 (25 bp)
AGCTCGGCGGTCAGGCATAAACCGG
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--1156--912Chr03:13655823..13655847 (25 bp)
AGGCATAAACCGGTGCGGCGCAGCA
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--649--4952Chr03:13655825..13655848 (24 bp)
GCATAAACCGGTGCGGCGCAGCAGA
LOC_Os03g24090
OsAffx.31294.1.S1_x_at--643--8351Chr11:19624513..19624537 (25 bp)
GGCGGCGCTCTTGGGCCGAGAGAAA
LOC_Os11g34330
Target Sequence 
AGGAGGCGGCAGACAACGGCGGCCCCCTCCCCTTCTTTTCATGCTGATCTTGGTGGTTGGACGGTTAGCATCTTCCTCCT
CAAGCTGAGATTTGGGAGGGGTCGTTACCGGTGGGGTCCCGGATGCGACGACAGTGGGAAGTCGAACCCTGTGCGGGGCG
GTGCTCCAGGACAGGCGGCGGCGTCAGGACCGAAGTGGTTTTCGGCGGCGTCATGGATAGGAGGTAAGGCGGGCAGCTCC
GGAGCTCGGCGGTCAGGCATAAACCGGTGCGGCGCAGCAGATGGGCGGCGGCGCTCTTGGGCCGAGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31294.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis